Variant report

Variant	rs9387628
Chromosome Location	chr6:119353018-119353019
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119346161..119349573-chr6:119350909..119353024,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1022707	0.90[CHB][hapmap];0.85[CHD][hapmap]
rs1022708	0.90[CHB][hapmap]
rs10499090	0.81[ASN][1000 genomes]
rs11153782	0.90[CHB][hapmap]
rs12527363	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12664251	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1885125	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs2145569	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs2357030	0.84[JPT][hapmap]
rs284919	0.84[JPT][hapmap]
rs2884078	0.95[JPT][hapmap]
rs3756940	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4946372	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs4946373	0.90[CHB][hapmap]
rs4946382	0.90[CHB][hapmap]
rs4946386	0.81[ASN][1000 genomes]
rs4946387	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904381	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs6918844	0.89[CHB][hapmap]
rs6929403	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6931074	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6939937	0.90[CHB][hapmap]
rs72970476	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7381535	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs9320671	0.90[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap]
rs9374777	0.95[JPT][hapmap]
rs9387621	0.91[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap]
rs9387624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387626	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401106	0.90[CHB][hapmap]
rs9401118	0.95[JPT][hapmap]
rs988098	0.90[CHB][hapmap];0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9387628	ASF1A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119331400-119356000	Weak transcription	Ovary	ovary
3	chr6:119331600-119355800	Weak transcription	K562	blood
4	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
6	chr6:119341400-119356200	Weak transcription	Fetal Stomach	stomach
7	chr6:119343400-119356400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:119343600-119355800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:119347400-119356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:119347800-119356000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:119350000-119353600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:119350200-119355400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:119350200-119356000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:119350400-119355400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:119350400-119355800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:119350400-119355800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:119352400-119361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:119352600-119353200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:119352800-119357000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:119353000-119355400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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