Variant report
Variant | rs9387786 |
---|---|
Chromosome Location | chr6:120787455-120787456 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11153899 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs11153902 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs12175516 | 0.82[ASN][1000 genomes] |
rs12175518 | 0.86[ASN][1000 genomes] |
rs12196599 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs12196831 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs12200585 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs12210251 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs9374916 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs9374917 | 0.82[ASN][1000 genomes] |
rs9387762 | 0.86[ASN][1000 genomes] |
rs9387763 | 0.86[ASN][1000 genomes] |
rs9387783 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs9387784 | 1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs9387785 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs9387787 | 1.00[ASN][1000 genomes] |
rs9387789 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs9401260 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2753290 | chr6:120309301-120979301 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
2 | esv2752474 | chr6:120309301-120982301 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv886578 | chr6:120570796-120805934 | Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv886580 | chr6:120577152-120805934 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv821651 | chr6:120635010-120830963 | Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | nsv886585 | chr6:120683728-120790347 | Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | esv2755321 | chr6:120726829-120855431 | Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv1021744 | chr6:120786615-120869190 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:120787200-120787800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
2 | chr6:120787200-120788400 | Active TSS | HUES6 Cell Line | embryonic stem cell |
3 | chr6:120787400-120787800 | Active TSS | H9 Cell Line | embryonic stem cell |