Variant report

Variant	rs9388837
Chromosome Location	chr6:131055944-131055945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1157609	0.93[ASN][1000 genomes]
rs12055387	0.88[ASN][1000 genomes]
rs12055575	0.88[ASN][1000 genomes]
rs12055636	0.91[ASN][1000 genomes]
rs1605605	0.83[ASN][1000 genomes]
rs17059517	0.91[ASN][1000 genomes]
rs17059604	0.84[ASN][1000 genomes]
rs1858044	0.88[ASN][1000 genomes]
rs2030024	0.81[ASN][1000 genomes]
rs2173300	0.83[ASN][1000 genomes]
rs28564053	0.95[ASN][1000 genomes]
rs28660687	0.98[ASN][1000 genomes]
rs9375761	0.82[ASN][1000 genomes]
rs9375764	0.99[ASN][1000 genomes]
rs9375767	0.86[ASN][1000 genomes]
rs9388838	0.97[ASN][1000 genomes]
rs9388842	0.90[ASN][1000 genomes]
rs9398959	0.96[ASN][1000 genomes]
rs9402268	0.82[ASN][1000 genomes]
rs9402270	0.84[ASN][1000 genomes]
rs9402272	0.96[ASN][1000 genomes]
rs9402277	0.92[ASN][1000 genomes]
rs9402278	0.88[ASN][1000 genomes]
rs9402280	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131051600-131059000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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