Variant report

Variant	rs9389113
Chromosome Location	chr6:134212285-134212286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr6:134212083-134212657	Hela-S3	cervix:	n/a	n/a
2	E2F6	chr6:134212179-134212919	A549	lung:	n/a	chr6:134212841-134212848 chr6:134212657-134212668 chr6:134212657-134212668 chr6:134212841-134212848 chr6:134212657-134212668 chr6:134212661-134212668 chr6:134212841-134212848 chr6:134212657-134212668 chr6:134212654-134212671 chr6:134212657-134212668 chr6:134212599-134212616
3	CEBPB	chr6:134212223-134212541	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr6:134212273-134212644	Hela-S3	cervix:	n/a	n/a
5	KAP1	chr6:134212164-134212703	U2OS	brain:	n/a	chr6:134212198-134212206
6	E2F6	chr6:134212221-134212823	H1-hESC	embryonic stem cell:	n/a	chr6:134212657-134212668 chr6:134212657-134212668 chr6:134212657-134212668 chr6:134212661-134212668 chr6:134212657-134212668 chr6:134212654-134212671 chr6:134212657-134212668 chr6:134212599-134212616
7	POLR2A	chr6:134211768-134214546	H1-neurons	neurons:	n/a	n/a
8	CTBP2	chr6:134212096-134213262	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAFK	chr6:134212253-134212476	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr6:134211788-134215010	H1-neurons	neurons:	n/a	n/a
11	ESR1	chr6:134212180-134212606	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr6:134210055-134213032	IMR90	lung:	n/a	n/a
13	MAX	chr6:134212198-134212715	A549	lung:	n/a	n/a
14	POLR2A	chr6:134212236-134212728	ProgFib	skin:	n/a	n/a
15	SP1	chr6:134212223-134212823	A549	lung:	n/a	chr6:134212795-134212807 chr6:134212796-134212806 chr6:134212797-134212806 chr6:134212796-134212810 chr6:134212795-134212807
16	POLR2A	chr6:134212270-134213178	Hela-S3	cervix:	n/a	n/a
17	TCF12	chr6:134212227-134212457	H1-hESC	embryonic stem cell:	n/a	n/a
18	TCF7L2	chr6:134212247-134213002	Hela-S3	cervix:	n/a	chr6:134212772-134212781 chr6:134212769-134212783
19	ESR1	chr6:134212229-134212588	ECC-1	luminal epithelium:	n/a	n/a
20	MAX	chr6:134212269-134212746	Hela-S3	cervix:	n/a	n/a
21	MAX	chr6:134212165-134213119	A549	lung:	n/a	n/a
22	TCF12	chr6:134212127-134212955	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000227954	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1208276	0.88[CEU][hapmap]
rs1208277	0.88[CEU][hapmap]
rs1336170	0.97[ASN][1000 genomes]
rs1572425	0.88[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs162183	0.83[EUR][1000 genomes]
rs2327431	0.88[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2327433	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327434	0.83[EUR][1000 genomes]
rs328456	0.83[EUR][1000 genomes]
rs4896011	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs6569916	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6932322	0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs693702	0.83[EUR][1000 genomes]
rs7766238	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7774514	0.83[EUR][1000 genomes]
rs9389114	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs9402546	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9402547	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134209200-134215200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
2	chr6:134209400-134212400	Bivalent/Poised TSS	Colonic Mucosa	Colon
3	chr6:134209400-134214000	Active TSS	Ovary	ovary
4	chr6:134209800-134213200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:134209800-134213200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:134210000-134212400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:134210000-134212400	Bivalent/Poised TSS	Placenta	Placenta
8	chr6:134210000-134213000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
9	chr6:134210000-134213000	Bivalent/Poised TSS	Left Ventricle	heart
10	chr6:134210000-134213200	Bivalent/Poised TSS	Fetal Stomach	stomach
11	chr6:134210000-134214000	Active TSS	NHLF	lung
12	chr6:134210200-134213000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:134210400-134212800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:134211000-134212400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
15	chr6:134211000-134212400	Active TSS	Right Atrium	heart
16	chr6:134211200-134212800	Bivalent/Poised TSS	NHDF-Ad	bronchial
17	chr6:134211200-134213600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:134211200-134214400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
19	chr6:134211400-134212400	Bivalent/Poised TSS	Fetal Lung	lung
20	chr6:134211400-134212400	Weak transcription	Gastric	stomach
21	chr6:134211400-134212400	Weak transcription	Pancreas	Pancrea
22	chr6:134211400-134212400	Weak transcription	Spleen	Spleen
23	chr6:134211400-134212400	Bivalent/Poised TSS	NH-A	brain
24	chr6:134211600-134212400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:134211600-134212400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:134211600-134213200	Bivalent/Poised TSS	Osteobl	bone
27	chr6:134211800-134212600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
28	chr6:134211800-134213200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr6:134211800-134213200	Active TSS	Hela-S3	cervix
30	chr6:134211800-134213800	Active TSS	A549	lung
31	chr6:134212000-134212400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
32	chr6:134212000-134212400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
33	chr6:134212000-134212400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:134212000-134212400	Bivalent/Poised TSS	Primary B cells from cord blood	blood
35	chr6:134212000-134212400	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
36	chr6:134212000-134212400	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:134212000-134212400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
38	chr6:134212000-134212600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:134212000-134212600	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:134212000-134212600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
41	chr6:134212000-134212600	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
42	chr6:134212000-134212800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:134212000-134212800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
44	chr6:134212000-134212800	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
45	chr6:134212000-134212800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
46	chr6:134212000-134213000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
47	chr6:134212000-134213000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
48	chr6:134212000-134213000	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:134212000-134213000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
50	chr6:134212000-134213000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links