Variant report

Variant	rs9389933
Chromosome Location	chr6:141883981-141883982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139688968..139691016-chr6:141882532..141884352,2	MCF-7	breast:
2	chr6:139692928..139695826-chr6:141882361..141885438,4	MCF-7	breast:
3	chr6:141630271..141631033-chr6:141883682..141884206,2	MCF-7	breast:
4	chr6:141630179..141631093-chr6:141883723..141884605,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2152972	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35335056	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5005180	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7738220	0.95[EUR][1000 genomes]
rs7742236	0.91[EUR][1000 genomes]
rs9385965	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9403324	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141881600-141884800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:141883000-141884000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:141883000-141884000	Flanking Active TSS	HUVEC	blood vessel
4	chr6:141883000-141884200	Active TSS	Primary B cells from cord blood	blood
5	chr6:141883000-141884800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:141883000-141884800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:141883000-141885000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:141883000-141885400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:141883200-141884000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:141883200-141884000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr6:141883200-141884000	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr6:141883200-141884000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:141883200-141884000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:141883200-141884000	Active TSS	Colonic Mucosa	Colon
15	chr6:141883200-141884000	Active TSS	Duodenum Mucosa	Duodenum
16	chr6:141883200-141884000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr6:141883200-141884200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:141883200-141884200	Active TSS	Fetal Kidney	kidney
19	chr6:141883200-141884200	Flanking Active TSS	Fetal Lung	lung
20	chr6:141883200-141884200	Enhancers	HMEC	breast
21	chr6:141883200-141884400	Active TSS	Aorta	Aorta
22	chr6:141883200-141884400	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:141883200-141884600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:141883200-141884600	Enhancers	Dnd41	blood
25	chr6:141883200-141884800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:141883200-141884800	Active TSS	Brain Substantia Nigra	brain
27	chr6:141883200-141885000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:141883200-141885000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:141883200-141885000	Active TSS	Brain Cingulate Gyrus	brain
30	chr6:141883200-141885000	Active TSS	Right Atrium	heart
31	chr6:141883200-141885800	Enhancers	Fetal Heart	heart
32	chr6:141883400-141884000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:141883400-141884000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:141883400-141884000	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr6:141883400-141884000	Flanking Active TSS	Primary T cells from cord blood	blood
36	chr6:141883400-141884000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr6:141883400-141884000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr6:141883400-141884000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:141883400-141884000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:141883400-141884000	Active TSS	Fetal Muscle Trunk	muscle
41	chr6:141883400-141884000	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr6:141883400-141884000	Flanking Active TSS	Fetal Stomach	stomach
43	chr6:141883400-141884000	Flanking Active TSS	Fetal Thymus	thymus
44	chr6:141883400-141884000	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr6:141883400-141884000	Active TSS	Right Ventricle	heart
46	chr6:141883400-141884000	Enhancers	HepG2	liver
47	chr6:141883400-141884000	Flanking Active TSS	NH-A	brain
48	chr6:141883400-141884000	Enhancers	NHLF	lung
49	chr6:141883400-141884200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr6:141883400-141884200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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