Variant report

Variant	rs9390194
Chromosome Location	chr6:145011143-145011144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11155370	0.85[CHB][hapmap]
rs9373421	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373424	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9376837	0.82[CHB][hapmap]
rs9376841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376844	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390195	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399493	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403589	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
2	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
3	chr6:144996600-145018400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:144997000-145011400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:144997000-145011800	Weak transcription	Colonic Mucosa	Colon
7	chr6:144997000-145017600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:144997200-145018000	Weak transcription	NHLF	lung
9	chr6:144999400-145013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:144999400-145025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:145000800-145025400	Weak transcription	HSMM	muscle
12	chr6:145002400-145013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:145002800-145018000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
15	chr6:145005000-145017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:145005000-145031000	Weak transcription	HUVEC	blood vessel
17	chr6:145005800-145017400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:145008200-145011600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:145008400-145021200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:145009000-145011400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:145009000-145011800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:145009000-145013000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:145009000-145013200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:145009000-145013200	Weak transcription	Fetal Lung	lung
25	chr6:145009000-145029600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:145009000-145047000	Weak transcription	Esophagus	oesophagus
27	chr6:145009200-145011400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:145009200-145013000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:145009200-145013200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:145009200-145013200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:145009200-145016600	Weak transcription	Liver	Liver
32	chr6:145009200-145018000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:145009400-145012800	Strong transcription	Primary T cells from cord blood	blood
34	chr6:145009800-145011600	Strong transcription	Primary hematopoietic stem cells	blood
35	chr6:145009800-145011600	Enhancers	Fetal Heart	heart
36	chr6:145009800-145012200	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr6:145009800-145013600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:145010000-145011200	Strong transcription	Fetal Intestine Large	intestine
39	chr6:145010000-145011200	Genic enhancers	Pancreas	Pancrea
40	chr6:145010000-145011400	Strong transcription	Adipose Nuclei	Adipose
41	chr6:145010000-145011800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:145010000-145012000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:145010000-145012000	Enhancers	Right Ventricle	heart
44	chr6:145010000-145012000	Strong transcription	Dnd41	blood
45	chr6:145010000-145012400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:145010000-145012400	Strong transcription	Fetal Stomach	stomach
47	chr6:145010000-145012600	Strong transcription	Fetal Intestine Small	intestine
48	chr6:145010000-145013600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:145010200-145011600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:145010200-145011800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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