Variant report

Variant	rs9390236
Chromosome Location	chr6:145169200-145169201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145168696..145171336-chr6:145172610..145175556,2	K562	blood:
2	chr6:145169081..145170847-chr6:145177041..145178659,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2282324	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9373429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9376863	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9376864	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9386086	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9390206	0.82[JPT][hapmap]
rs9390212	0.82[JPT][hapmap]
rs9390226	0.82[JPT][hapmap]
rs9390230	0.82[JPT][hapmap]
rs9390232	0.82[JPT][hapmap]
rs9390233	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9399502	0.82[JPT][hapmap]
rs9399510	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403620	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
3	chr6:145130800-145172200	Weak transcription	NH-A	brain
4	chr6:145137400-145176800	Weak transcription	Fetal Heart	heart
5	chr6:145137800-145175800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:145141400-145172000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:145141400-145175200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:145142000-145171400	Weak transcription	HMEC	breast
9	chr6:145143000-145173600	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr6:145154200-145175200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:145154400-145173400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr6:145154400-145175000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:145154400-145175200	Strong transcription	Dnd41	blood
14	chr6:145154800-145169200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:145154800-145175200	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:145155800-145171800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:145157400-145173400	Weak transcription	Fetal Brain Male	brain
18	chr6:145157800-145169200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:145157800-145176400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:145158600-145176800	Weak transcription	Esophagus	oesophagus
21	chr6:145158800-145173600	Weak transcription	Psoas Muscle	Psoas
22	chr6:145158800-145174800	Weak transcription	Placenta	Placenta
23	chr6:145159200-145173800	Weak transcription	GM12878-XiMat	blood
24	chr6:145159200-145176600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:145159400-145171600	Weak transcription	Fetal Kidney	kidney
26	chr6:145159400-145177400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:145159600-145175200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:145161000-145170000	Weak transcription	Aorta	Aorta
29	chr6:145161000-145174400	Weak transcription	Right Ventricle	heart
30	chr6:145161000-145176000	Weak transcription	Pancreas	Pancrea
31	chr6:145161000-145179000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:145162200-145170800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:145162200-145171600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:145162400-145172400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:145162400-145173200	Weak transcription	Colonic Mucosa	Colon
36	chr6:145162600-145169400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:145162600-145169600	Weak transcription	Brain Anterior Caudate	brain
38	chr6:145162600-145171200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:145162600-145173800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:145162600-145176400	Weak transcription	Fetal Intestine Large	intestine
41	chr6:145162800-145176600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:145163200-145169200	Weak transcription	Ovary	ovary
43	chr6:145163800-145176200	Weak transcription	Fetal Intestine Small	intestine
44	chr6:145164200-145174800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:145164400-145175800	Strong transcription	Primary B cells from cord blood	blood
46	chr6:145164600-145169400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:145164600-145172200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:145165400-145169600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:145165400-145171600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:145165400-145171800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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