Variant report

Variant	rs9390608
Chromosome Location	chr6:149112958-149112959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6903326	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9386235	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9390609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390610	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9403985	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9498159	1.00[CEU][hapmap]
rs9498160	1.00[CEU][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149097000-149114400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:149098400-149114000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:149098400-149114600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:149098400-149114600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:149102800-149122600	Weak transcription	Ovary	ovary
6	chr6:149103000-149115800	Weak transcription	Aorta	Aorta
7	chr6:149103600-149121600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:149104000-149116200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:149106200-149120800	Weak transcription	Fetal Heart	heart
10	chr6:149110400-149114400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:149111400-149113600	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:149111400-149125000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:149111600-149115800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:149112000-149114600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:149112000-149114800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:149112000-149119000	Weak transcription	Spleen	Spleen
17	chr6:149112200-149113000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:149112200-149114400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:149112200-149114600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:149112200-149114600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:149112200-149124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:149112400-149114400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:149112400-149119400	Weak transcription	Fetal Thymus	thymus
24	chr6:149112400-149119600	Weak transcription	Pancreas	Pancrea
25	chr6:149112600-149113200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:149112600-149113200	Enhancers	Brain Substantia Nigra	brain
27	chr6:149112800-149113000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:149112800-149113000	Enhancers	Stomach Mucosa	stomach
29	chr6:149112800-149114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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