Variant report

Variant	rs9390612
Chromosome Location	chr6:149120342-149120343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149118997..149121960-chr6:149128657..149130734,2	MCF-7	breast:
2	chr6:149119839..149122676-chr6:149125565..149127456,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12525672	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6909077	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6929401	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs922898	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981376	chr6:149115789-149121607	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149102800-149122600	Weak transcription	Ovary	ovary
2	chr6:149103600-149121600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:149106200-149120800	Weak transcription	Fetal Heart	heart
4	chr6:149111400-149125000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:149112200-149124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:149113200-149125000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:149114800-149121200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:149115200-149120400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:149115200-149125000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:149115400-149125000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:149115800-149144800	Weak transcription	Primary B cells from cord blood	blood
12	chr6:149116200-149122800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:149116200-149133600	Weak transcription	Fetal Stomach	stomach
14	chr6:149116400-149123000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:149116600-149120400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:149116600-149121000	Weak transcription	Osteobl	bone
17	chr6:149116600-149121200	Weak transcription	Aorta	Aorta
18	chr6:149116600-149122600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:149116600-149124800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:149116600-149124800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:149116800-149120400	Weak transcription	Stomach Mucosa	stomach
22	chr6:149116800-149121000	Weak transcription	NHEK	skin
23	chr6:149116800-149121600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:149117000-149121200	Weak transcription	HMEC	breast
25	chr6:149117400-149123200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:149118800-149122000	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:149119400-149122600	Weak transcription	Spleen	Spleen
28	chr6:149119600-149121200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:149119800-149120400	Weak transcription	Pancreas	Pancrea
30	chr6:149120000-149122600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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