Variant report
| Variant | rs9391683 |
|---|---|
| Chromosome Location | chr6:30361358-30361359 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:30360733..30362483-chr6:30523991..30525891,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000204576 | Chromatin interaction |
| ENSG00000204590 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:50)
| rs_ID | r2[population] |
|---|---|
| rs2078680 | 0.98[ASN][1000 genomes] |
| rs3094037 | 0.99[ASN][1000 genomes] |
| rs3094038 | 0.99[ASN][1000 genomes] |
| rs3094039 | 0.99[ASN][1000 genomes] |
| rs3094040 | 0.99[ASN][1000 genomes] |
| rs3094041 | 0.99[ASN][1000 genomes] |
| rs3094042 | 0.99[ASN][1000 genomes] |
| rs3094043 | 0.96[ASN][1000 genomes] |
| rs3094044 | 0.95[ASN][1000 genomes] |
| rs3094045 | 0.98[ASN][1000 genomes] |
| rs3094046 | 0.98[ASN][1000 genomes] |
| rs3094047 | 0.98[ASN][1000 genomes] |
| rs3094048 | 0.98[ASN][1000 genomes] |
| rs3094623 | 0.95[ASN][1000 genomes] |
| rs3094695 | 0.99[ASN][1000 genomes] |
| rs3094696 | 0.99[ASN][1000 genomes] |
| rs3094697 | 0.99[ASN][1000 genomes] |
| rs3094698 | 0.99[ASN][1000 genomes] |
| rs3094699 | 0.98[ASN][1000 genomes] |
| rs3094700 | 0.98[ASN][1000 genomes] |
| rs3094701 | 0.98[ASN][1000 genomes] |
| rs3094702 | 0.98[ASN][1000 genomes] |
| rs3129816 | 0.83[ASN][1000 genomes] |
| rs3129825 | 0.95[ASN][1000 genomes] |
| rs3129826 | 0.95[ASN][1000 genomes] |
| rs3129827 | 0.95[ASN][1000 genomes] |
| rs3129828 | 0.95[ASN][1000 genomes] |
| rs3130105 | 0.95[ASN][1000 genomes] |
| rs3130106 | 0.99[ASN][1000 genomes] |
| rs3130107 | 0.99[ASN][1000 genomes] |
| rs3130108 | 0.98[ASN][1000 genomes] |
| rs3130109 | 0.99[ASN][1000 genomes] |
| rs3130110 | 0.99[ASN][1000 genomes] |
| rs3130111 | 0.99[ASN][1000 genomes] |
| rs3130112 | 0.99[ASN][1000 genomes] |
| rs3130113 | 0.99[ASN][1000 genomes] |
| rs3130114 | 0.96[ASN][1000 genomes] |
| rs3130115 | 0.97[ASN][1000 genomes] |
| rs3130362 | 0.83[ASN][1000 genomes] |
| rs3132621 | 0.95[ASN][1000 genomes] |
| rs3132622 | 0.95[ASN][1000 genomes] |
| rs3132623 | 0.95[ASN][1000 genomes] |
| rs3132639 | 0.83[ASN][1000 genomes] |
| rs3132640 | 0.83[ASN][1000 genomes] |
| rs3132641 | 0.83[ASN][1000 genomes] |
| rs3132642 | 0.81[ASN][1000 genomes] |
| rs3132643 | 0.83[ASN][1000 genomes] |
| rs3132644 | 0.83[ASN][1000 genomes] |
| rs9261700 | 0.95[ASN][1000 genomes] |
| rs9391684 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025667 | chr6:30292845-30638066 | Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 825 gene(s) | inside rSNPs | diseases |
| 2 | nsv969293 | chr6:30348821-30368580 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv18372 | chr6:30359622-30363319 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv16525 | chr6:30361117-30364291 | Bivalent Enhancer Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv18201 | chr6:30361192-30362471 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv1841008 | chr6:30361193-30362425 | Bivalent Enhancer Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv1842534 | chr6:30361193-30362425 | Bivalent Enhancer Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9391683 | ZKSCAN4 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:30359800-30364600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
