Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:23784877..23787259-chr6:23789996..23792696,2	K562	blood:

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11753829	0.88[EUR][1000 genomes]
rs12526798	0.88[EUR][1000 genomes]
rs12661929	0.91[EUR][1000 genomes]
rs12664827	0.90[EUR][1000 genomes]
rs1325015	0.83[EUR][1000 genomes]
rs1325016	0.84[EUR][1000 genomes]
rs1325026	0.89[EUR][1000 genomes]
rs1325027	0.89[EUR][1000 genomes]
rs1325028	0.90[EUR][1000 genomes]
rs1511473	0.82[EUR][1000 genomes]
rs1547642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925200	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2147702	0.88[EUR][1000 genomes]
rs2182074	0.88[EUR][1000 genomes]
rs4530849	0.83[EUR][1000 genomes]
rs62399833	0.89[EUR][1000 genomes]
rs62399834	0.89[EUR][1000 genomes]
rs62399835	0.89[EUR][1000 genomes]
rs62399838	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62401894	0.85[EUR][1000 genomes]
rs9295598	0.88[EUR][1000 genomes]
rs9356892	0.85[EUR][1000 genomes]
rs9356893	0.85[EUR][1000 genomes]
rs9356894	0.85[EUR][1000 genomes]
rs9356898	0.87[EUR][1000 genomes]
rs9358692	0.87[EUR][1000 genomes]
rs9358693	0.89[EUR][1000 genomes]
rs9358695	0.89[EUR][1000 genomes]
rs9358696	0.89[EUR][1000 genomes]
rs9358697	0.89[EUR][1000 genomes]
rs9366532	0.85[EUR][1000 genomes]
rs9379581	0.87[EUR][1000 genomes]
rs9379583	0.87[EUR][1000 genomes]
rs9379584	0.86[EUR][1000 genomes]
rs9379585	0.89[EUR][1000 genomes]
rs9393473	0.88[EUR][1000 genomes]
rs9393475	0.89[EUR][1000 genomes]
rs9393476	0.91[EUR][1000 genomes]
rs942659	0.88[EUR][1000 genomes]
rs942660	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2755115	chr6:23743412-23790212	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv432855	chr6:23765651-23790212	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv981322	chr6:23781341-23791763	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23790000-23790400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:23790000-23790600	Enhancers	HUES48 Cell Line	embryonic stem cell

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