Variant report

Variant	rs9393640
Chromosome Location	chr6:25328672-25328673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25318943..25320704-chr6:25326151..25329125,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16890377	0.92[EUR][1000 genomes]
rs1883393	0.90[EUR][1000 genomes]
rs2690111	0.99[ASN][1000 genomes]
rs6908260	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6932783	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9295655	0.94[ASN][1000 genomes]
rs9348672	0.90[ASN][1000 genomes]
rs9366615	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366617	0.94[ASN][1000 genomes]
rs9366618	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25306600-25331400	Weak transcription	Spleen	Spleen
2	chr6:25313400-25329800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:25313800-25331400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:25315400-25329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:25321000-25329400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:25321000-25329600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:25321000-25331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:25321200-25329200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:25321200-25329400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:25321200-25329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:25321600-25329200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:25321600-25329400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:25321600-25329600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:25321600-25329800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:25321600-25341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:25323000-25333200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:25324600-25329200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:25324600-25329600	Weak transcription	Brain Substantia Nigra	brain
19	chr6:25324600-25330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:25324600-25331600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:25325000-25329400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:25325000-25331600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:25325200-25328800	Enhancers	Fetal Heart	heart
24	chr6:25325200-25329400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:25325200-25330200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:25325200-25330200	Weak transcription	Esophagus	oesophagus
27	chr6:25325200-25331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:25325200-25331400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:25325200-25331400	Weak transcription	Placenta	Placenta
30	chr6:25325200-25331400	Weak transcription	Pancreas	Pancrea
31	chr6:25325200-25331400	Weak transcription	HSMMtube	muscle
32	chr6:25325200-25336400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:25325200-25336400	Weak transcription	Lung	lung
34	chr6:25326600-25329200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr6:25326800-25333000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:25327000-25329200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:25327000-25332600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:25327200-25328800	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:25327200-25329600	Weak transcription	Gastric	stomach
40	chr6:25327400-25330200	Weak transcription	Right Atrium	heart
41	chr6:25327600-25329200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:25327600-25329400	Weak transcription	Brain Anterior Caudate	brain
43	chr6:25327600-25329400	Weak transcription	Small Intestine	intestine
44	chr6:25327600-25329600	Weak transcription	Fetal Intestine Large	intestine
45	chr6:25327600-25331400	Weak transcription	Ovary	ovary
46	chr6:25327600-25332600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:25327600-25337400	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:25327800-25329400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:25328000-25329200	Enhancers	Brain Germinal Matrix	brain
50	chr6:25328200-25329400	Weak transcription	Fetal Intestine Small	intestine

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