Variant report

Variant	rs9393682
Chromosome Location	chr6:26057050-26057051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:59)
CpG islands
(count:0)
Chromatin interactive
region (count:49)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:59 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:26054297-26057540	PANC-1	pancreas:	n/a	n/a
2	NRF1	chr6:26056238-26057111	GM12878	blood:	n/a	chr6:26056734-26056748 chr6:26056734-26056745 chr6:26056731-26056745 chr6:26056734-26056745
3	RCOR1	chr6:26055078-26057097	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr6:26054570-26057123	GM12878	blood:	n/a	n/a
5	HEY1	chr6:26054442-26057279	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:26054872-26057266	HUVEC	blood vessel:	n/a	n/a
7	SP1	chr6:26054633-26057095	HCT-116	colon:	n/a	chr6:26055736-26055745 chr6:26055299-26055313 chr6:26056738-26056759
8	NFIC	chr6:26054861-26057338	HepG2	liver:	n/a	n/a
9	NR2F2	chr6:26052050-26057615	K562	blood:	n/a	n/a
10	MYBL2	chr6:26054665-26057558	HepG2	liver:	n/a	n/a
11	EBF1	chr6:26056344-26057254	GM12878	blood:	n/a	n/a
12	MAFK	chr6:26055012-26057096	Hela-S3	cervix:	n/a	chr6:26056960-26056975
13	POLR2A	chr6:26052854-26057545	K562	blood:	n/a	n/a
14	PML	chr6:26054735-26057186	GM12878	blood:	n/a	n/a
15	STAT3	chr6:26054946-26057134	GM12878	blood:	n/a	chr6:26057007-26057018 chr6:26056982-26056989
16	POLR2A	chr6:26053715-26057543	GM12878	blood:	n/a	n/a
17	FOXM1	chr6:26054677-26057111	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:26054358-26057055	GM12892	blood:	n/a	n/a
19	MAX	chr6:26057050-26057139	H1-hESC	embryonic stem cell:	n/a	n/a
20	TCF12	chr6:26056156-26057103	SK-N-SH	brain:	n/a	n/a
21	WRNIP1	chr6:26055138-26057141	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:26053763-26057052	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr6:26054379-26057329	HepG2	liver:	n/a	n/a
24	POLR2A	chr6:26052885-26057194	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr6:26053844-26057563	K562	blood:	n/a	n/a
26	CREB1	chr6:26054906-26057306	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:26054478-26057170	PFSK-1	brain:	n/a	n/a
28	NFIC	chr6:26054580-26057067	GM12878	blood:	n/a	n/a
29	MYBL2	chr6:26054384-26057391	HepG2	liver:	n/a	n/a
30	POLR2A	chr6:26055165-26057070	MCF-7	breast:	n/a	n/a
31	IRF1	chr6:26056369-26057149	K562	blood:	n/a	chr6:26057006-26057017 chr6:26057008-26057022 chr6:26057008-26057018
32	POLR2A	chr6:26054944-26057070	SK-N-MC	brain:	n/a	n/a
33	POLR2A	chr6:26053553-26057227	GM12878	blood:	n/a	n/a
34	HEY1	chr6:26053537-26057249	HepG2	liver:	n/a	n/a
35	TCF12	chr6:26054587-26057403	A549	lung:	n/a	n/a
36	SIN3AK20	chr6:26054327-26057135	MCF-7	breast:	n/a	n/a
37	POLR2A	chr6:26054485-26057187	SK-N-MC	brain:	n/a	n/a
38	POLR2A	chr6:26054222-26057076	GM12878	blood:	n/a	n/a
39	MYC	chr6:26056357-26057076	K562	blood:	n/a	n/a
40	EP300	chr6:26054924-26057089	SK-N-SH	brain:	n/a	chr6:26057009-26057023
41	POLR2A	chr6:26054192-26057190	Hela-S3	cervix:	n/a	n/a
42	TEAD4	chr6:26052514-26057679	K562	blood:	n/a	chr6:26052618-26052627
43	ZEB1	chr6:26054589-26057445	HepG2	liver:	n/a	n/a
44	TAF7	chr6:26054005-26057117	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr6:26054293-26057333	Hela-S3	cervix:	n/a	n/a
46	TCF12	chr6:26055102-26057163	ECC-1	luminal epithelium:	n/a	n/a
47	POLR2A	chr6:26054419-26057139	MCF10A-Er-Src	breast:	n/a	n/a
48	POLR2A	chr6:26054860-26057064	HUVEC	blood vessel:	n/a	n/a
49	MTA3	chr6:26054395-26057273	GM12878	blood:	n/a	n/a
50	CEBPB	chr6:26054962-26057214	HCT-116	colon:	n/a	n/a

No data

(count:49 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:42538608..42539586-chr6:26056616..26057177,2	NB4	blood:
2	chr6:26055713..26057538-chr6:27839787..27841318,2	MCF-7	breast:
3	chr14:64970690..64971415-chr6:26056192..26057172,2	Hela-S3	cervix:
4	chr15:40762952..40763883-chr6:26056601..26057141,2	NB4	blood:
5	chr6:26054309..26057181-chr6:26284749..26286697,3	MCF-7	breast:
6	chr10:101380312..101380889-chr6:26056240..26057196,2	Hela-S3	cervix:
7	chr6:26056601..26057146-chr7:27779901..27780547,2	NB4	blood:
8	chr6:26052762..26068184-chr6:26093226..26113078,68	MCF-7	breast:
9	chr6:26054867..26057868-chr6:27113403..27117423,5	K562	blood:
10	chr20:44044443..44045130-chr6:26056486..26057096,2	Hela-S3	cervix:
11	chr6:26055873..26057142-chr6:26156132..26157208,3	Hela-S3	cervix:
12	chr16:68268704..68271099-chr6:26055048..26057879,2	MCF-7	breast:
13	chr21:46346404..46349719-chr6:26054432..26057685,3	MCF-7	breast:
14	chr6:26053512..26063692-chr6:26116837..26127451,29	MCF-7	breast:
15	chr1:210547151..210547696-chr6:26056200..26057150,2	Hela-S3	cervix:
16	chr1:174967994..174968767-chr6:26056381..26057142,2	Hela-S3	cervix:
17	chr6:26056308..26057054-chr6:35436068..35436860,2	Hela-S3	cervix:
18	chr6:26056629..26057130-chr9:19102816..19103401,2	Hela-S3	cervix:
19	chr6:26054191..26059059-chr6:27859322..27865313,6	K562	blood:
20	chr15:65596830..65597827-chr6:26056379..26057139,3	Hela-S3	cervix:
21	chr18:61636121..61638697-chr6:26055420..26057457,2	MCF-7	breast:
22	chr6:26054717..26057409-chr6:27111004..27117900,9	K562	blood:
23	chr6:26054953..26059351-chr6:26183267..26187731,5	MCF-7	breast:
24	chr6:26055472..26057747-chr6:27104934..27107205,2	K562	blood:
25	chr2:75937256..75938194-chr6:26056531..26057101,2	Hela-S3	cervix:
26	chr6:26056379..26057136-chr7:100026791..100027381,2	NB4	blood:
27	chr6:26056232..26057928-chr6:26382432..26384674,2	K562	blood:
28	chr1:113615667..113617631-chr6:26055280..26057308,2	MCF-7	breast:
29	chr1:113933188..113935605-chr6:26055289..26057331,2	MCF-7	breast:
30	chr17:57921581..57923409-chr6:26056859..26058414,2	MCF-7	breast:
31	chr5:38845650..38846357-chr6:26056274..26057103,2	Hela-S3	cervix:
32	chr3:100119965..100120769-chr6:26056301..26057168,2	Hela-S3	cervix:
33	chr19:47290294..47292275-chr6:26055258..26057231,2	K562	blood:
34	chr1:19536698..19537577-chr6:26056307..26057085,2	Hela-S3	cervix:
35	chr6:26051079..26061905-chr6:26152751..26161537,32	MCF-7	breast:
36	chr6:26055076..26057223-chr6:27113673..27115365,2	MCF-7	breast:
37	chr10:126605631..126606133-chr6:26056603..26057392,2	HCT-116	colon:
38	chr19:9649073..9649595-chr6:26056405..26057061,2	Hela-S3	cervix:
39	chr6:26056591..26057154-chr6:26156450..26156973,2	HCT-116	colon:
40	chr6:26055512..26057298-chr6:27860261..27862179,2	MCF-7	breast:
41	chr6:26054507..26059193-chr6:26196981..26201593,9	MCF-7	breast:
42	chr6:26052973..26057907-chr6:27859322..27863269,5	K562	blood:
43	chr6:26054474..26058085-chr6:27777303..27780745,6	MCF-7	breast:
44	chr20:47896686..47897518-chr6:26056192..26057101,2	Hela-S3	cervix:
45	chr6:26055768..26057563-chr6:27773736..27776348,2	MCF-7	breast:
46	chr6:26054611..26058222-chr6:27833185..27835454,4	MCF-7	breast:
47	chr6:26056017..26057172-chrX:47004185..47005019,3	Hela-S3	cervix:
48	chr13:53225937..53226845-chr6:26056295..26057101,2	NB4	blood:
49	chr11:118661439..118662143-chr6:26056260..26057114,2	NB4	blood:

No data

Variant related genes	Relation type
HIST1H1C	TF binding region
ENSG00000124508	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000249456	Chromatin interaction
ENSG00000169105	Chromatin interaction
ENSG00000160255	Chromatin interaction
ENSG00000127481	Chromatin interaction
ENSG00000260475	Chromatin interaction
ENSG00000081026	Chromatin interaction
ENSG00000229893	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000166401	Chromatin interaction
ENSG00000110367	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000222365	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000212304	Chromatin interaction
ENSG00000116161	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000151233	Chromatin interaction
ENSG00000155287	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000105281	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000130818	Chromatin interaction
ENSG00000198558	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000238198	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000154174	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000103067	Chromatin interaction
ENSG00000165416	Chromatin interaction
ENSG00000124155	Chromatin interaction
ENSG00000147874	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000182872	Chromatin interaction
ENSG00000249740	Chromatin interaction
ENSG00000206535	Chromatin interaction
ENSG00000230424	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000147123	Chromatin interaction
ENSG00000005436	Chromatin interaction
ENSG00000197697	Chromatin interaction
ENSG00000145623	Chromatin interaction
ENSG00000198799	Chromatin interaction
ENSG00000200156	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10946801	0.81[JPT][hapmap]
rs1800708	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes]
rs2050947	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051542	1.00[ASW][hapmap];0.97[GIH][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap]
rs2230653	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2237231	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3752418	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3830054	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6906576	0.80[MEX][hapmap]
rs6908263	0.97[GIH][hapmap];0.82[TSI][hapmap]
rs7740793	0.80[MEX][hapmap]
rs7743957	0.83[AFR][1000 genomes]
rs7753826	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9295676	1.00[ASW][hapmap];0.93[MEX][hapmap]
rs9295682	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs933199	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap]
rs9366637	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379817	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9393685	0.83[AFR][1000 genomes]
rs9467667	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9393682	TRIM38	cis	lymphoblastoid	seeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26053200-26057400	Active TSS	K562	blood
2	chr6:26053600-26057200	Active TSS	Thymus	Thymus
3	chr6:26054000-26057400	Active TSS	GM12878-XiMat	blood
4	chr6:26054200-26057200	Active TSS	Sigmoid Colon	Sigmoid Colon
5	chr6:26054200-26057400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:26054200-26057400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:26054200-26057400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:26054200-26057400	Active TSS	Brain Anterior Caudate	brain
9	chr6:26054200-26057400	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr6:26054200-26057400	Active TSS	Stomach Smooth Muscle	stomach
11	chr6:26054200-26057400	Active TSS	A549	lung
12	chr6:26054200-26057600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:26054200-26057600	Active TSS	H1 Cell Line	embryonic stem cell
14	chr6:26054200-26057600	Active TSS	Colonic Mucosa	Colon
15	chr6:26054400-26057200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:26054400-26057200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:26054400-26057200	Active TSS	HSMM	muscle
18	chr6:26054400-26057400	Active TSS	H9 Cell Line	embryonic stem cell
19	chr6:26054400-26057400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:26054400-26057400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:26054400-26057400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:26054400-26057400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:26054400-26057400	Active TSS	Psoas Muscle	Psoas
24	chr6:26054400-26057400	Active TSS	Right Ventricle	heart
25	chr6:26054400-26057600	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr6:26054400-26057600	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:26054400-26057600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr6:26054400-26057600	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr6:26054400-26057600	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr6:26054400-26057600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:26054400-26057600	Active TSS	Fetal Muscle Trunk	muscle
32	chr6:26054600-26057200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:26054600-26057200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:26054600-26057200	Active TSS	Esophagus	oesophagus
35	chr6:26054600-26057200	Active TSS	Placenta	Placenta
36	chr6:26054600-26057200	Active TSS	Left Ventricle	heart
37	chr6:26054600-26057200	Active TSS	HSMMtube	muscle
38	chr6:26054600-26057400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:26054600-26057400	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:26054600-26057400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:26054600-26057400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr6:26054600-26057400	Active TSS	Fetal Intestine Large	intestine
43	chr6:26054600-26057400	Active TSS	Ovary	ovary
44	chr6:26054600-26057400	Active TSS	Stomach Mucosa	stomach
45	chr6:26054600-26057400	Active TSS	NHLF	lung
46	chr6:26054600-26057600	Active TSS	Fetal Stomach	stomach
47	chr6:26054800-26057200	Active TSS	Small Intestine	intestine
48	chr6:26054800-26057200	Active TSS	Dnd41	blood
49	chr6:26054800-26057400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:26054800-26057400	Active TSS	iPS-18 Cell Line	embryonic stem cell

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