Variant report

Variant	rs9393866
Chromosome Location	chr6:27967506-27967507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27960700..27962517-chr6:27966241..27968012,2	K562	blood:
2	chr6:27965316..27968016-chr6:27970592..27972506,2	K562	blood:
3	chr6:27960700..27963468-chr6:27966241..27968640,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12055625	0.81[CHB][hapmap]
rs1321504	0.85[JPT][hapmap]
rs149943	0.81[CHB][hapmap]
rs149990	0.81[CHB][hapmap]
rs16893573	0.81[CHB][hapmap]
rs202906	0.81[CHB][hapmap]
rs2277104	1.00[AFR][1000 genomes]
rs3757188	0.81[CHB][hapmap]
rs4713127	0.84[AMR][1000 genomes]
rs4713139	0.81[CHB][hapmap]
rs4713140	0.81[CHB][hapmap]
rs56870390	0.84[AMR][1000 genomes]
rs9348779	0.84[AMR][1000 genomes]
rs9357052	0.84[AMR][1000 genomes]
rs9368535	0.84[AMR][1000 genomes]
rs9368536	0.84[AMR][1000 genomes]
rs9380026	0.84[AMR][1000 genomes]
rs9380032	0.81[CHB][hapmap]
rs9380051	0.81[CHB][hapmap]
rs9380064	0.81[CHB][hapmap]
rs9393862	0.84[AMR][1000 genomes]
rs9393882	0.81[CHB][hapmap]
rs9393902	0.81[CHB][hapmap]
rs9468287	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
4	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27966600-27970600	Weak transcription	Right Atrium	heart

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