Variant report

Variant	rs9394158
Chromosome Location	chr6:33613367-33613368
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33612102..33615096-chr6:33621382..33624139,2	K562	blood:
2	chr6:33611230..33613955-chr6:33617910..33620269,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12662536	0.81[JPT][hapmap]
rs1408711	0.84[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570759	0.86[JPT][hapmap]
rs2229634	0.81[JPT][hapmap]
rs2296336	0.83[JPT][hapmap]
rs2296337	0.81[JPT][hapmap]
rs2296343	0.81[JPT][hapmap]
rs6901411	0.81[JPT][hapmap]
rs6935686	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9366825	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394159	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
3	esv1817557	chr6:33584788-33614127	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv1813933	chr6:33587443-33614127	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33602400-33617800	Weak transcription	NHLF	lung
2	chr6:33602400-33622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:33602400-33636400	Weak transcription	HSMMtube	muscle
4	chr6:33602600-33614800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:33602600-33619200	Weak transcription	NHDF-Ad	bronchial
6	chr6:33602600-33623400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:33602600-33624400	Weak transcription	Small Intestine	intestine
8	chr6:33602600-33625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:33602600-33625800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:33602600-33631600	Weak transcription	Osteobl	bone
11	chr6:33602800-33613400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:33602800-33624400	Weak transcription	Pancreas	Pancrea
13	chr6:33603000-33624000	Weak transcription	HSMM	muscle
14	chr6:33603000-33628600	Weak transcription	Primary B cells from cord blood	blood
15	chr6:33603200-33619600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:33603400-33623000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:33603400-33626000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:33603400-33640400	Weak transcription	HUVEC	blood vessel
19	chr6:33603400-33641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:33604400-33614400	Weak transcription	HepG2	liver
21	chr6:33604800-33623000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:33604800-33623400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:33605000-33624400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:33605000-33625400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:33605200-33624000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:33605200-33624400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:33605200-33636400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:33606600-33633000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:33606800-33626200	Weak transcription	A549	lung
30	chr6:33606800-33646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:33608200-33640800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:33609200-33616400	Weak transcription	Fetal Thymus	thymus
33	chr6:33609600-33623600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:33609800-33619400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:33610000-33615000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:33610200-33615000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:33610200-33615000	Weak transcription	HMEC	breast
38	chr6:33610400-33623600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:33610400-33624000	Weak transcription	Fetal Lung	lung
40	chr6:33610400-33624000	Weak transcription	Stomach Mucosa	stomach
41	chr6:33610400-33626000	Weak transcription	K562	blood
42	chr6:33610600-33614400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:33610600-33617400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:33610800-33614400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:33610800-33615000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:33611000-33617800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:33611000-33618200	Strong transcription	NHEK	skin
48	chr6:33611000-33622200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:33611200-33617200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:33611200-33619200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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