Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10498744	0.84[EUR][1000 genomes]
rs12175102	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198307	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12213318	1.00[MEX][hapmap]
rs12663154	0.84[EUR][1000 genomes]
rs1927774	0.82[JPT][hapmap]
rs1927775	0.82[JPT][hapmap]
rs1952362	0.82[JPT][hapmap]
rs2045577	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs2273063	0.85[TSI][hapmap]
rs3736735	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs4446569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4540261	0.82[JPT][hapmap]
rs55720712	0.84[EUR][1000 genomes]
rs56198073	0.84[EUR][1000 genomes]
rs72853254	0.84[EUR][1000 genomes]
rs9349123	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380863	0.82[JPT][hapmap]
rs9380880	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs9380882	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394600	0.80[JPT][hapmap]
rs9394609	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs9394615	0.92[EUR][1000 genomes]
rs9394619	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9471130	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv508405	chr6:39538802-39602108	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv462920	chr6:39544831-39588118	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv602964	chr6:39544831-39588118	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39545800-39554400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:39550200-39555000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:39551400-39561200	Weak transcription	Brain Substantia Nigra	brain
4	chr6:39551400-39585000	Weak transcription	Brain Hippocampus Middle	brain

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