Variant report

Variant	rs9398513
Chromosome Location	chr6:119767459-119767460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119670894..119673375-chr6:119766065..119768407,2	MCF-7	breast:
2	chr6:119668933..119671927-chr6:119765997..119768389,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1110028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341490	0.84[CEU][hapmap]
rs1573047	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946413	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6903310	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6913097	0.84[CEU][hapmap]
rs7745025	0.87[CEU][hapmap]
rs904573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372535	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9401144	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9481923	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv1845804	chr6:119747112-119771715	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119763400-119768200	Enhancers	Dnd41	blood
3	chr6:119763400-119768400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:119763400-119772200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:119763600-119767600	Enhancers	Adipose Nuclei	Adipose
6	chr6:119763600-119768400	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:119763600-119772200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:119765000-119768600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:119765200-119768200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:119765200-119768200	Enhancers	K562	blood
11	chr6:119765400-119768200	Enhancers	NH-A	brain
12	chr6:119765400-119768600	Enhancers	Osteobl	bone
13	chr6:119765800-119767800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:119765800-119768200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:119765800-119768200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:119766000-119768600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:119766000-119769000	Enhancers	Stomach Mucosa	stomach
18	chr6:119766000-119770000	Weak transcription	Primary B cells from cord blood	blood
19	chr6:119766000-119770200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:119766400-119767600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:119766400-119767600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:119766400-119768200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:119766400-119768400	Enhancers	Brain Hippocampus Middle	brain
24	chr6:119766400-119768400	Enhancers	Small Intestine	intestine
25	chr6:119766600-119767800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:119766600-119768400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:119766600-119768800	Enhancers	Brain Anterior Caudate	brain
28	chr6:119766600-119768800	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:119766800-119767600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:119766800-119767600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:119766800-119768000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:119766800-119768200	Enhancers	NHDF-Ad	bronchial
33	chr6:119766800-119768400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:119766800-119768400	Enhancers	Placenta	Placenta
35	chr6:119766800-119768400	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:119766800-119768400	Enhancers	HSMMtube	muscle
37	chr6:119766800-119768800	Enhancers	Fetal Lung	lung
38	chr6:119767000-119767600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:119767000-119767600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:119767000-119767800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:119767000-119767800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:119767000-119767800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:119767000-119767800	Enhancers	Fetal Intestine Small	intestine
44	chr6:119767000-119767800	Enhancers	Right Ventricle	heart
45	chr6:119767000-119768000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:119767000-119768200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:119767000-119768200	Enhancers	Aorta	Aorta
48	chr6:119767000-119768200	Enhancers	Brain Angular Gyrus	brain
49	chr6:119767000-119768200	Enhancers	Brain Cingulate Gyrus	brain
50	chr6:119767000-119768200	Enhancers	Pancreas	Pancrea

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