The 2.0 version of rSNPBase

Variant report

Variant rs9399423
Chromosome Location chr6:143458848-143458849
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143441200-143479000 Weak transcription NHLF lung
2 chr6:143443600-143462200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr6:143443800-143498800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr6:143444600-143516400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr6:143445800-143479200 Weak transcription Lung lung
6 chr6:143448400-143487400 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr6:143451000-143460400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr6:143452000-143497000 Weak transcription Fetal Stomach stomach
9 chr6:143452200-143477800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr6:143452800-143461400 Weak transcription Fetal Heart heart
11 chr6:143452800-143461800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr6:143452800-143463800 Weak transcription H1 Cell Line embryonic stem cell
13 chr6:143453000-143459200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr6:143453000-143460600 Weak transcription Brain Cingulate Gyrus brain
15 chr6:143453000-143461800 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr6:143453000-143462000 Weak transcription Brain Angular Gyrus brain
17 chr6:143453000-143462000 Weak transcription Colon Smooth Muscle Colon
18 chr6:143453000-143464400 Weak transcription HSMM muscle
19 chr6:143453000-143465400 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr6:143453000-143474200 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr6:143453000-143481600 Weak transcription Right Ventricle heart
22 chr6:143453000-143497200 Weak transcription Pancreas Pancrea
23 chr6:143453000-143508600 Weak transcription Fetal Lung lung
24 chr6:143453000-143510600 Weak transcription Brain Inferior Temporal Lobe brain
25 chr6:143453200-143460800 Weak transcription Fetal Kidney kidney
26 chr6:143453200-143470800 Weak transcription Primary neutrophils fromperipheralblood blood
27 chr6:143454200-143464000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr6:143455600-143460000 Weak transcription Brain Hippocampus Middle brain
29 chr6:143456200-143461600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr6:143456200-143463600 Weak transcription Psoas Muscle Psoas
31 chr6:143456400-143462600 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr6:143456600-143460400 Weak transcription Brain Anterior Caudate brain
33 chr6:143456800-143459800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr6:143457000-143465400 Weak transcription HSMMtube muscle
35 chr6:143457200-143460200 Weak transcription Primary B cells from peripheral blood blood
36 chr6:143457200-143460400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr6:143457200-143460800 Weak transcription Muscle Satellite Cultured Cells --
38 chr6:143457200-143470800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr6:143457600-143459200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
40 chr6:143457600-143459200 Enhancers Primary T helper cells fromperipheralblood blood
41 chr6:143457600-143459200 Enhancers Primary T killer memory cells from peripheral blood blood
42 chr6:143457600-143459800 Strong transcription HMEC breast
43 chr6:143457800-143459200 Strong transcription Ovary ovary
44 chr6:143457800-143459400 Strong transcription Fetal Intestine Large intestine
45 chr6:143457800-143460000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr6:143457800-143460400 Weak transcription NHDF-Ad bronchial
47 chr6:143457800-143463800 Strong transcription Liver Liver
48 chr6:143458000-143459200 Strong transcription HUES6 Cell Line embryonic stem cell
49 chr6:143458000-143459200 Strong transcription Left Ventricle heart
50 chr6:143458000-143459400 Strong transcription HepG2 liver

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Last update: Aug 31, 2015