Variant report

Variant	rs9399457
Chromosome Location	chr6:144008718-144008719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143996710..144001910-chr6:144005817..144014875,10	MCF-7	breast:
2	chr6:144005095..144007441-chr6:144008353..144010500,3	K562	blood:
3	chr6:144004544..144009046-chr6:144017005..144020189,4	K562	blood:
4	chr6:144002192..144005187-chr6:144008261..144010591,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9403495	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144000600-144008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144001800-144012200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:144002000-144013000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:144002800-144011200	Weak transcription	Hela-S3	cervix
5	chr6:144003600-144009800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:144003600-144015000	Weak transcription	Esophagus	oesophagus
7	chr6:144003600-144015000	Weak transcription	Gastric	stomach
8	chr6:144003800-144008800	Weak transcription	Fetal Stomach	stomach
9	chr6:144004400-144010000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:144004400-144013000	Weak transcription	Fetal Kidney	kidney
11	chr6:144005000-144009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:144005000-144020400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:144005600-144016000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:144005800-144009000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:144005800-144015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:144006000-144009000	Weak transcription	Right Ventricle	heart
17	chr6:144006000-144009800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:144006000-144011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:144006000-144013200	Weak transcription	Small Intestine	intestine
20	chr6:144006000-144017800	Weak transcription	Fetal Heart	heart
21	chr6:144007800-144008800	Enhancers	NHEK	skin
22	chr6:144007800-144009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:144007800-144009000	Enhancers	HSMM	muscle
24	chr6:144007800-144009200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:144007800-144009200	Enhancers	HMEC	breast
26	chr6:144007800-144009200	Enhancers	NH-A	brain
27	chr6:144007800-144009400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:144007800-144009400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:144007800-144009400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:144007800-144009600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:144007800-144009600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr6:144007800-144011800	Enhancers	Left Ventricle	heart
33	chr6:144007800-144013200	Enhancers	HepG2	liver
34	chr6:144007800-144013600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:144008000-144008800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:144008000-144008800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:144008000-144008800	Enhancers	Adipose Nuclei	Adipose
38	chr6:144008000-144008800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr6:144008000-144008800	Weak transcription	Fetal Intestine Small	intestine
40	chr6:144008000-144008800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:144008000-144008800	Flanking Active TSS	HUVEC	blood vessel
42	chr6:144008000-144009000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:144008000-144009000	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr6:144008000-144009200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr6:144008000-144009200	Weak transcription	Spleen	Spleen
46	chr6:144008000-144009400	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr6:144008000-144009600	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr6:144008000-144009600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr6:144008000-144009600	Enhancers	Rectal Smooth Muscle	rectum
50	chr6:144008000-144010200	Enhancers	Right Atrium	heart

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