Variant report

Variant	rs9400044
Chromosome Location	chr6:107107314-107107315
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107106063..107107710-chr6:107116693..107119239,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12199991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751018	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9373885	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9384627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv516902	chr6:107104374-107115394	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9400044	QRSL1	Cis_1M	lymphoblastoid	RTeQTL
rs9400044	QRSL1	cis	Thyroid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107110200	Weak transcription	NHLF	lung
2	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
3	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
5	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:107090000-107109000	Strong transcription	Liver	Liver
10	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
11	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:107092200-107107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
14	chr6:107096400-107109000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr6:107099200-107110200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:107100000-107108800	Strong transcription	Left Ventricle	heart
17	chr6:107100200-107108200	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:107100200-107108400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:107100200-107109200	Strong transcription	Thymus	Thymus
20	chr6:107100200-107111800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:107100600-107109000	Strong transcription	Stomach Smooth Muscle	stomach
22	chr6:107100800-107107400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:107100800-107108000	Strong transcription	Fetal Kidney	kidney
24	chr6:107101400-107111000	Weak transcription	HUVEC	blood vessel
25	chr6:107101600-107111200	Weak transcription	Right Ventricle	heart
26	chr6:107103000-107109600	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:107103400-107108000	Strong transcription	HSMM	muscle
28	chr6:107103600-107107600	Weak transcription	Aorta	Aorta
29	chr6:107104000-107107800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:107104000-107108800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:107104200-107113000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:107104400-107109000	ZNF genes & repeats	Fetal Intestine Small	intestine
33	chr6:107104600-107107400	ZNF genes & repeats	Fetal Intestine Large	intestine
34	chr6:107104600-107107600	Weak transcription	Fetal Brain Male	brain
35	chr6:107104600-107108800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
36	chr6:107104800-107107800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:107104800-107108400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
38	chr6:107104800-107108600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:107104800-107110800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:107104800-107115000	Weak transcription	Colonic Mucosa	Colon
41	chr6:107104800-107116200	Weak transcription	Brain Angular Gyrus	brain
42	chr6:107104800-107116400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:107105000-107107400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:107105000-107107800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:107105000-107107800	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:107105000-107110600	Weak transcription	Spleen	Spleen
47	chr6:107105000-107118000	Weak transcription	Esophagus	oesophagus
48	chr6:107105000-107118000	Weak transcription	Gastric	stomach
49	chr6:107105200-107107800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:107105200-107108200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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