Variant report

Variant	rs9401042
Chromosome Location	chr6:118320469-118320470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12664757	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12664850	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12664862	0.84[EUR][1000 genomes]
rs1361285	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1416412	0.91[EUR][1000 genomes]
rs1416413	0.93[EUR][1000 genomes]
rs1538456	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17223658	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1856473	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1856474	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2355793	0.83[EUR][1000 genomes]
rs2355797	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945603	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4945606	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4946307	0.93[EUR][1000 genomes]
rs4946308	0.82[EUR][1000 genomes]
rs4946309	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4946314	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4946316	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62433678	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6568992	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7742998	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9320621	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9320622	0.85[EUR][1000 genomes]
rs9374692	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9387527	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9387528	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9387529	0.83[EUR][1000 genomes]
rs9387536	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398467	0.91[EUR][1000 genomes]
rs9401039	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9481753	0.85[EUR][1000 genomes]
rs9481755	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv981179	chr6:118317043-118324199	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118315400-118324400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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