Variant report

Variant	rs9401181
Chromosome Location	chr6:120155531-120155532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6928479	0.89[AFR][1000 genomes]
rs6928687	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9401181	SLC25A43	trans	lymphoblastoid	seeQTL
rs9401181	COL10A1	cis	parietal	SCAN
rs9401181	TSPYL1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120152200-120163400	Weak transcription	Pancreas	Pancrea
2	chr6:120152800-120177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:120153400-120155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:120154800-120155800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:120155200-120155600	Enhancers	Brain Germinal Matrix	brain
6	chr6:120155200-120155600	Enhancers	HMEC	breast
7	chr6:120155200-120156000	Enhancers	NHEK	skin
8	chr6:120155400-120155800	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links