Variant report

Variant	rs9401366
Chromosome Location	chr6:121370053-121370054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12193286	0.81[EUR][1000 genomes]
rs12193647	0.80[EUR][1000 genomes]
rs12201207	0.81[EUR][1000 genomes]
rs12214337	0.81[EUR][1000 genomes]
rs1935944	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1935946	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2019215	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203590	0.83[EUR][1000 genomes]
rs4945673	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4945677	0.82[EUR][1000 genomes]
rs6913600	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914477	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923560	0.81[EUR][1000 genomes]
rs6940453	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6940928	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7741350	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748027	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9482115	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv464037	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604571	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv886593	chr6:121362591-121414770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3337008	chr6:121363624-121370054	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121369400-121370600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:121369800-121370200	Weak transcription	Stomach Mucosa	stomach
3	chr6:121369800-121370200	Weak transcription	NHEK	skin
4	chr6:121369800-121370600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:121369800-121370600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:121370000-121370200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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