Variant report

Variant	rs9402017
Chromosome Location	chr6:128410449-128410450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17828130	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs4557544	1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs4628122	1.00[AMR][1000 genomes]
rs7761076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375553	0.90[AMR][1000 genomes]
rs9385450	0.90[AMR][1000 genomes]
rs9388623	1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs9398864	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv516794	chr6:128403745-128430506	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128370000-128412600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:128372400-128412200	Weak transcription	Placenta	Placenta
4	chr6:128374600-128419400	Weak transcription	Esophagus	oesophagus
5	chr6:128375000-128419400	Weak transcription	Gastric	stomach
6	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
7	chr6:128375600-128413000	Weak transcription	Colonic Mucosa	Colon
8	chr6:128379000-128432800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:128379400-128412200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:128385800-128419400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:128388600-128412800	Weak transcription	Fetal Lung	lung
12	chr6:128388800-128411600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:128389000-128411400	Weak transcription	Adipose Nuclei	Adipose
14	chr6:128389000-128412800	Weak transcription	NHLF	lung
15	chr6:128389000-128419400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:128389000-128419400	Weak transcription	Pancreas	Pancrea
17	chr6:128389600-128410600	Weak transcription	Left Ventricle	heart
18	chr6:128389600-128410800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:128389600-128417600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:128389600-128418200	Weak transcription	Brain Substantia Nigra	brain
21	chr6:128389600-128419400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:128390200-128412600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:128390800-128415000	Weak transcription	NHDF-Ad	bronchial
24	chr6:128390800-128419600	Weak transcription	NH-A	brain
25	chr6:128395400-128417400	Weak transcription	Fetal Heart	heart
26	chr6:128398600-128412600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:128398800-128419400	Weak transcription	HMEC	breast
28	chr6:128399000-128418000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:128399000-128422600	Weak transcription	HUVEC	blood vessel
30	chr6:128399200-128419200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:128399400-128417600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:128400600-128410600	Weak transcription	Osteobl	bone
33	chr6:128401200-128410800	Weak transcription	HSMMtube	muscle
34	chr6:128401400-128419400	Weak transcription	Small Intestine	intestine
35	chr6:128401400-128431800	Weak transcription	Right Ventricle	heart
36	chr6:128401600-128419600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:128401800-128433600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:128403800-128417400	Weak transcription	Fetal Kidney	kidney
39	chr6:128403800-128419400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:128403800-128420800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:128403800-128421600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:128404000-128412600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:128404000-128415400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:128404000-128419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
46	chr6:128404200-128411800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:128404400-128422000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:128404600-128417600	Weak transcription	Liver	Liver
49	chr6:128405000-128410600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:128405000-128431400	Weak transcription	Primary B cells from cord blood	blood

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