Variant report

Variant	rs9402276
Chromosome Location	chr6:131063056-131063057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10457557	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872374	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11154603	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11966663	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12173491	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12191209	0.89[EUR][1000 genomes]
rs12191580	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12206483	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12207178	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12209009	0.89[EUR][1000 genomes]
rs12210679	0.89[EUR][1000 genomes]
rs6907589	0.87[EUR][1000 genomes]
rs9375762	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9375765	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388832	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9398960	0.89[EUR][1000 genomes]
rs9402269	0.85[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9402274	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9402276	C6orf192	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131059000-131065800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131062000-131063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:131063000-131063600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:131063000-131063600	Enhancers	HSMMtube	muscle
5	chr6:131063000-131063800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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