Variant report

Variant	rs9402379
Chromosome Location	chr6:132299893-132299894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9388956	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:132292800-132301600	Weak transcription	Stomach Mucosa	stomach
3	chr6:132296600-132304400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:132296800-132301400	Weak transcription	Fetal Kidney	kidney
5	chr6:132297000-132305400	Enhancers	Liver	Liver
6	chr6:132298000-132303000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:132298200-132300800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:132298200-132302200	Weak transcription	Right Atrium	heart
9	chr6:132298200-132302800	Weak transcription	Ovary	ovary
10	chr6:132298200-132319000	Weak transcription	Aorta	Aorta
11	chr6:132298400-132300800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:132298400-132301400	Weak transcription	Fetal Intestine Small	intestine
13	chr6:132298400-132301600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:132298600-132300800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:132298600-132301000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:132298800-132301200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:132299000-132300600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:132299200-132300800	Weak transcription	Osteobl	bone
19	chr6:132299200-132301200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:132299600-132300000	Enhancers	Fetal Intestine Large	intestine
21	chr6:132299800-132300000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:132299800-132300000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:132299800-132300000	Enhancers	Pancreas	Pancrea
24	chr6:132299800-132300000	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:132299800-132300000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr6:132299800-132300000	Enhancers	HUVEC	blood vessel
27	chr6:132299800-132300200	Flanking Active TSS	HepG2	liver

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