Variant report

Variant	rs9402396
Chromosome Location	chr6:132644595-132644596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10484483	1.00[CEU][hapmap]
rs1474617	0.90[ASN][1000 genomes]
rs17061185	1.00[CEU][hapmap]
rs605507	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs626471	0.80[CHB][hapmap]
rs672312	0.80[CHB][hapmap]
rs73546022	0.88[ASN][1000 genomes]
rs7740843	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132626600-132651400	Weak transcription	Fetal Stomach	stomach
2	chr6:132635600-132655000	Weak transcription	NH-A	brain
3	chr6:132637000-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132638800-132654800	Weak transcription	Fetal Kidney	kidney
5	chr6:132639000-132648800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:132639000-132651200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:132643000-132644600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:132643000-132644600	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:132643000-132645200	Enhancers	Osteobl	bone
11	chr6:132643400-132644600	Genic enhancers	NHDF-Ad	bronchial
12	chr6:132643600-132645200	Enhancers	NHLF	lung
13	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:132644200-132645000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:132644200-132646000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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