Variant report

Variant	rs9405759
Chromosome Location	chr6:4661689-4661690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs417641	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs437875	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9328263	0.84[AMR][1000 genomes]
rs9328266	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9378895	0.85[ASN][1000 genomes]
rs9504183	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4659000-4664200	Weak transcription	Right Ventricle	heart
2	chr6:4659200-4662600	Weak transcription	K562	blood
3	chr6:4659200-4662800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:4660600-4661800	Enhancers	Aorta	Aorta
5	chr6:4660600-4662000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:4661000-4662000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:4661000-4662000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:4661000-4663400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:4661200-4661800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:4661200-4661800	Enhancers	Spleen	Spleen
11	chr6:4661200-4662000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:4661200-4662000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:4661200-4662000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:4661200-4662000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:4661200-4662000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:4661200-4662000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:4661200-4662600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:4661200-4664200	Weak transcription	Right Atrium	heart
19	chr6:4661400-4661800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:4661400-4662000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:4661400-4662000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:4661400-4662000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:4661400-4662800	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:4661400-4664400	Weak transcription	Fetal Stomach	stomach
25	chr6:4661600-4662000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:4661600-4662000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr6:4661600-4662000	Enhancers	HepG2	liver
28	chr6:4661600-4664000	Weak transcription	Psoas Muscle	Psoas
29	chr6:4661600-4665000	Enhancers	Stomach Smooth Muscle	stomach

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