Variant report

Variant	rs9406589
Chromosome Location	chr9:16222313-16222314
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10962338	0.81[CHB][hapmap]
rs16934274	0.91[CEU][hapmap]
rs9406590	0.89[EUR][1000 genomes]
rs9407721	0.88[EUR][1000 genomes]
rs9407727	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892641	chr9:16218659-16242088	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9406589	TYRP1	cis	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16215000-16223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16218000-16222600	Enhancers	NHDF-Ad	bronchial
3	chr9:16218600-16223400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16218600-16233600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:16219000-16223600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:16220800-16222400	Enhancers	Adipose Nuclei	Adipose
7	chr9:16221200-16222400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:16221200-16222400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:16221200-16222400	Enhancers	Fetal Kidney	kidney
10	chr9:16221200-16222400	Enhancers	Fetal Lung	lung
11	chr9:16221200-16222600	Enhancers	Osteobl	bone
12	chr9:16221200-16223200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:16221200-16223400	Enhancers	Hela-S3	cervix
14	chr9:16221200-16224000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:16221200-16224000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:16221200-16224200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:16221400-16222400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:16221400-16222400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:16221400-16222400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:16221400-16222400	Enhancers	NHLF	lung
21	chr9:16221400-16222600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:16221400-16223200	Enhancers	A549	lung
23	chr9:16221400-16223800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr9:16221400-16223800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:16221600-16222600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr9:16221600-16222600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:16221600-16224200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr9:16221600-16226800	Weak transcription	Right Atrium	heart
29	chr9:16221800-16222400	Enhancers	GM12878-XiMat	blood
30	chr9:16221800-16223600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:16221800-16223600	Weak transcription	Fetal Stomach	stomach
32	chr9:16221800-16224400	Enhancers	Fetal Intestine Small	intestine
33	chr9:16221800-16224400	Enhancers	Stomach Mucosa	stomach
34	chr9:16222000-16222400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr9:16222000-16222600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:16222000-16223400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:16222200-16223400	Enhancers	Duodenum Mucosa	Duodenum
38	chr9:16222200-16224800	Enhancers	Fetal Intestine Large	intestine

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