Variant report

Variant	rs9406618
Chromosome Location	chr9:16309527-16309528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4961693	0.94[EUR][1000 genomes]
rs7853960	0.93[EUR][1000 genomes]
rs7870883	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7875643	0.88[EUR][1000 genomes]
rs869625	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs9406609	0.88[EUR][1000 genomes]
rs9406619	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9407750	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9407751	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv892645	chr9:16292669-16368732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16304200-16310800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:16305600-16309800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:16305600-16310000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:16307000-16311000	Weak transcription	Pancreas	Pancrea
5	chr9:16307200-16310000	Weak transcription	Fetal Kidney	kidney
6	chr9:16307600-16311400	Weak transcription	Stomach Mucosa	stomach
7	chr9:16308600-16309600	Enhancers	Fetal Stomach	stomach
8	chr9:16308600-16311000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:16308600-16313400	Enhancers	Ovary	ovary
10	chr9:16308800-16310800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:16308800-16310800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr9:16308800-16318200	Enhancers	Fetal Lung	lung
13	chr9:16309000-16309800	Bivalent Enhancer	Fetal Brain Female	brain
14	chr9:16309000-16310000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:16309000-16310800	Enhancers	Brain Germinal Matrix	brain
16	chr9:16309000-16311000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:16309000-16311000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
18	chr9:16309000-16312400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:16309200-16309600	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr9:16309200-16309800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:16309200-16309800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:16309200-16310000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr9:16309200-16310400	Enhancers	Placenta	Placenta
24	chr9:16309200-16310400	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:16309200-16310600	Enhancers	H1 Cell Line	embryonic stem cell
26	chr9:16309200-16310600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:16309200-16310800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr9:16309200-16311000	Enhancers	Right Atrium	heart
29	chr9:16309200-16311400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:16309400-16309600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:16309400-16309600	Bivalent Enhancer	Fetal Brain Male	brain
32	chr9:16309400-16309600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
33	chr9:16309400-16310600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:16309400-16311200	Enhancers	Adipose Nuclei	Adipose
35	chr9:16309400-16311200	Enhancers	Fetal Intestine Large	intestine
36	chr9:16309400-16311200	Enhancers	Rectal Smooth Muscle	rectum

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