Variant report

Variant	rs9406750
Chromosome Location	chr9:18437473-18437474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18436804..18438586-chr9:18439890..18441991,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10733353	0.85[EUR][1000 genomes]
rs10738508	0.85[EUR][1000 genomes]
rs10756961	0.84[EUR][1000 genomes]
rs10810968	0.82[EUR][1000 genomes]
rs10963613	1.00[YRI][hapmap]
rs10963621	1.00[YRI][hapmap]
rs10963625	1.00[YRI][hapmap]
rs1147797	1.00[YRI][hapmap]
rs11789537	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12376289	1.00[YRI][hapmap]
rs1340041	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1888065	0.91[EUR][1000 genomes]
rs2066151	0.85[EUR][1000 genomes]
rs2772398	0.88[ASN][1000 genomes]
rs2772399	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2791454	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2791455	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2791456	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2805926	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5026813	0.86[ASN][1000 genomes]
rs7020495	0.84[EUR][1000 genomes]
rs7043305	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7046957	0.83[EUR][1000 genomes]
rs7872307	0.85[EUR][1000 genomes]
rs7873681	0.83[EUR][1000 genomes]
rs9406749	0.90[ASN][1000 genomes]
rs9407912	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18431800-18437600	Weak transcription	NHDF-Ad	bronchial
2	chr9:18436400-18437600	Enhancers	HUVEC	blood vessel
3	chr9:18436600-18437600	Enhancers	Ovary	ovary
4	chr9:18436600-18437800	Enhancers	HSMM	muscle
5	chr9:18436600-18439400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:18436800-18437600	Flanking Active TSS	Fetal Heart	heart
7	chr9:18436800-18437600	Enhancers	Hela-S3	cervix
8	chr9:18436800-18438200	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr9:18437000-18437600	Enhancers	Liver	Liver
10	chr9:18437000-18437600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr9:18437000-18437600	Enhancers	Osteobl	bone
12	chr9:18437000-18437800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:18437000-18437800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:18437000-18437800	Enhancers	Fetal Lung	lung
15	chr9:18437000-18437800	Enhancers	Left Ventricle	heart
16	chr9:18437000-18437800	Enhancers	Right Atrium	heart
17	chr9:18437000-18437800	Enhancers	Right Ventricle	heart
18	chr9:18437000-18438000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:18437000-18438600	Enhancers	Placenta	Placenta
20	chr9:18437200-18437800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:18437200-18438200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:18437200-18438200	Enhancers	Fetal Kidney	kidney
23	chr9:18437200-18438400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:18437400-18437800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:18437400-18437800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:18437400-18437800	Enhancers	Adipose Nuclei	Adipose
27	chr9:18437400-18437800	Enhancers	Brain Substantia Nigra	brain
28	chr9:18437400-18437800	Enhancers	Colon Smooth Muscle	Colon
29	chr9:18437400-18437800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:18437400-18437800	Enhancers	HSMMtube	muscle
31	chr9:18437400-18437800	Enhancers	NH-A	brain
32	chr9:18437400-18437800	Enhancers	NHLF	lung
33	chr9:18437400-18438000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:18437400-18438200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:18437400-18438200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:18437400-18438200	Enhancers	Fetal Stomach	stomach
37	chr9:18437400-18438400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:18437400-18438400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:18437400-18439000	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr9:18437400-18439200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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