Variant report

Variant	rs9409514
Chromosome Location	chr9:97065439-97065440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2479601	0.85[CEU][hapmap]
rs2479602	0.84[CEU][hapmap]
rs3118753	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3118754	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3118756	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs3131901	0.80[EUR][1000 genomes]
rs3131902	0.80[EUR][1000 genomes]
rs3131904	0.80[EUR][1000 genomes]
rs3131910	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744346	0.84[CEU][hapmap]
rs688165	0.84[CEU][hapmap]
rs7031496	0.85[CEU][hapmap]
rs7848227	0.84[CEU][hapmap]
rs9409512	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9409513	0.89[CEU][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9409718	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9409759	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:97042600-97068400	Weak transcription	Fetal Brain Female	brain
3	chr9:97043800-97066400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:97055600-97066600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:97055600-97067800	Weak transcription	HepG2	liver
6	chr9:97055600-97068000	Weak transcription	Pancreas	Pancrea
7	chr9:97062800-97066200	Weak transcription	Fetal Brain Male	brain
8	chr9:97063200-97066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:97063600-97068200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:97064200-97067600	Weak transcription	Primary T cells from cord blood	blood
11	chr9:97064200-97068000	Weak transcription	Adipose Nuclei	Adipose
12	chr9:97064400-97065800	Enhancers	K562	blood
13	chr9:97064600-97066200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:97064800-97067400	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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