Variant report

Variant	rs9410586
Chromosome Location	chr9:86260234-86260235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86236003..86240617-chr9:86259278..86264102,9	MCF-7	breast:
2	chr9:86243566..86245560-chr9:86258572..86260267,2	MCF-7	breast:
3	chr9:86247178..86252278-chr9:86254565..86260519,7	MCF-7	breast:
4	chr9:86251932..86254568-chr9:86256964..86260409,3	K562	blood:

Variant related genes	Relation type
ENSG00000148057	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1044214	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1052690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11792478	1.00[CHB][hapmap]
rs2780970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2780971	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2780974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780976	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2780980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2781002	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2781006	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2781007	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2781008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2811908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2811910	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2811913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2811918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811920	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41282413	0.80[AFR][1000 genomes]
rs72746853	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9410882	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86238600-86265000	Weak transcription	Ovary	ovary
2	chr9:86238800-86260600	Weak transcription	Right Ventricle	heart
3	chr9:86238800-86264600	Weak transcription	Psoas Muscle	Psoas
4	chr9:86239000-86264800	Weak transcription	HMEC	breast
5	chr9:86239000-86265200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:86239200-86261000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:86239400-86266200	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:86239400-86266400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:86239600-86260800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:86239600-86260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:86239600-86265000	Weak transcription	HUVEC	blood vessel
12	chr9:86239600-86266600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:86239600-86272200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:86239800-86266800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:86240200-86265000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:86242400-86264800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:86242600-86265000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:86243200-86260800	Weak transcription	Primary B cells from cord blood	blood
19	chr9:86243200-86261000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:86243200-86269600	Weak transcription	Pancreas	Pancrea
21	chr9:86243600-86264800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr9:86243600-86266200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:86244000-86260600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr9:86244000-86260800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr9:86244200-86264600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:86244400-86262200	Weak transcription	A549	lung
27	chr9:86244400-86264600	Weak transcription	NHLF	lung
28	chr9:86244800-86260400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:86244800-86260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:86244800-86261200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:86244800-86278800	Weak transcription	Spleen	Spleen
32	chr9:86244800-86285800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:86245000-86260400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:86245000-86260600	Weak transcription	Fetal Stomach	stomach
35	chr9:86245000-86261000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:86245000-86264800	Weak transcription	Dnd41	blood
37	chr9:86245000-86265000	Weak transcription	Aorta	Aorta
38	chr9:86245000-86265000	Weak transcription	Esophagus	oesophagus
39	chr9:86245000-86268800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:86245200-86260800	Weak transcription	Fetal Intestine Large	intestine
41	chr9:86245200-86264600	Weak transcription	Osteobl	bone
42	chr9:86245200-86266400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr9:86246000-86265000	Weak transcription	Fetal Kidney	kidney
44	chr9:86246000-86266400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:86246200-86260600	Weak transcription	Fetal Brain Female	brain
46	chr9:86246200-86264400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:86246200-86265000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr9:86246400-86260800	Weak transcription	Fetal Muscle Leg	muscle
49	chr9:86246400-86262400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:86246600-86260600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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