Variant report

Variant	rs941107
Chromosome Location	chr12:105778789-105778790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1061749	0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10735403	0.84[ASN][1000 genomes]
rs10735404	0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10746024	0.94[ASN][1000 genomes]
rs10778394	0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10861405	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs10861406	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10861408	0.86[ASN][1000 genomes]
rs10861416	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11112491	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1432588	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2116675	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6539209	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7960794	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7962661	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs8181638	0.85[ASN][1000 genomes]
rs9988966	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9989027	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899500	chr12:105742674-105803028	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105764800-105803600	Weak transcription	Thymus	Thymus
2	chr12:105777000-105787400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105777200-105781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:105777200-105783000	Weak transcription	NHLF	lung
5	chr12:105777200-105787200	Weak transcription	NH-A	brain
6	chr12:105777200-105787200	Weak transcription	NHDF-Ad	bronchial
7	chr12:105777200-105787400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:105777200-105787400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:105777200-105793400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:105777400-105778800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:105777400-105778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:105777400-105778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:105777400-105778800	Weak transcription	Osteobl	bone
14	chr12:105777400-105781400	Weak transcription	Fetal Stomach	stomach
15	chr12:105777400-105793200	Weak transcription	Aorta	Aorta
16	chr12:105777600-105781200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:105778200-105779400	Enhancers	Fetal Intestine Small	intestine
18	chr12:105778200-105779600	Enhancers	Fetal Intestine Large	intestine
19	chr12:105778200-105779600	Enhancers	HSMMtube	muscle
20	chr12:105778400-105779400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr12:105778400-105779600	Enhancers	HMEC	breast
22	chr12:105778600-105778800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr12:105778600-105779000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr12:105778600-105779000	Enhancers	HSMM	muscle
25	chr12:105778600-105779200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:105778600-105779200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:105778600-105779200	Enhancers	NHEK	skin
28	chr12:105778600-105779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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