Variant report

Variant	rs9411242
Chromosome Location	chr9:139950008-139950009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:139949854-139950550	A549	lung:	n/a	n/a
2	TAF1	chr9:139948260-139950464	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:139949431-139950553	HepG2	liver:	n/a	n/a
4	REST	chr9:139949966-139950498	SK-N-SH	brain:	n/a	chr9:139950078-139950088
5	TAF1	chr9:139949959-139950480	HepG2	liver:	n/a	n/a
6	NFIC	chr9:139949489-139950754	ECC-1	luminal epithelium:	n/a	n/a
7	NR3C1	chr9:139949759-139950724	A549	lung:	n/a	chr9:139950653-139950660
8	MAX	chr9:139949909-139950593	A549	lung:	n/a	chr9:139950356-139950366
9	POLR2A	chr9:139949481-139950493	HepG2	liver:	n/a	n/a
10	ELF1	chr9:139949919-139950340	HepG2	liver:	n/a	n/a
11	HNF4A	chr9:139949494-139950572	HepG2	liver:	n/a	chr9:139950232-139950247 chr9:139949713-139949728 chr9:139949656-139949678 chr9:139949695-139949707 chr9:139950232-139950247 chr9:139950233-139950246 chr9:139950232-139950247 chr9:139950234-139950246 chr9:139949693-139949708 chr9:139950232-139950247 chr9:139949694-139949708 chr9:139950057-139950071 chr9:139950234-139950246
12	HDAC2	chr9:139949956-139950630	HepG2	liver:	n/a	n/a
13	NFIC	chr9:139949518-139950776	ECC-1	luminal epithelium:	n/a	n/a
14	MAZ	chr9:139949967-139950754	IMR90	lung:	n/a	chr9:139950630-139950640 chr9:139950356-139950366
15	SP1	chr9:139949996-139950606	A549	lung:	n/a	chr9:139950352-139950366 chr9:139950075-139950084 chr9:139950577-139950590 chr9:139950356-139950365 chr9:139950110-139950124 chr9:139950217-139950231
16	FOSL2	chr9:139949843-139950186	A549	lung:	n/a	n/a
17	TCF12	chr9:139949400-139950777	ECC-1	luminal epithelium:	n/a	chr9:139949483-139949493 chr9:139949486-139949496 chr9:139950226-139950236 chr9:139949487-139949494 chr9:139950426-139950436
18	POLR2A	chr9:139948991-139950732	HepG2	liver:	n/a	n/a
19	EP300	chr9:139949657-139950727	ECC-1	luminal epithelium:	n/a	chr9:139950181-139950194
20	POLR2A	chr9:139949949-139950455	ECC-1	luminal epithelium:	n/a	n/a
21	SP1	chr9:139949980-139950543	HepG2	liver:	n/a	chr9:139950352-139950366 chr9:139950075-139950084 chr9:139950356-139950365 chr9:139950110-139950124 chr9:139950217-139950231
22	CEBPD	chr9:139949937-139950485	HepG2	liver:	n/a	n/a
23	CTCF	chr9:139950000-139950150	AG04450	lung:	n/a	chr9:139950087-139950103
24	HNF4G	chr9:139949907-139950487	HepG2	liver:	n/a	chr9:139950232-139950247 chr9:139950232-139950247 chr9:139950233-139950246 chr9:139950232-139950247 chr9:139950234-139950246 chr9:139950057-139950071 chr9:139950234-139950246
25	ZBTB7A	chr9:139947818-139950748	ECC-1	luminal epithelium:	n/a	chr9:139950369-139950376 chr9:139947972-139947980 chr9:139947854-139947862
26	TCF12	chr9:139949460-139950784	ECC-1	luminal epithelium:	n/a	chr9:139949483-139949493 chr9:139949486-139949496 chr9:139950226-139950236 chr9:139949487-139949494 chr9:139950426-139950436
27	MYBL2	chr9:139949897-139950593	HepG2	liver:	n/a	n/a
28	TBP	chr9:139949199-139950413	HepG2	liver:	n/a	n/a
29	ZBTB7A	chr9:139949995-139950509	HepG2	liver:	n/a	chr9:139950369-139950376
30	CTCF	chr9:139949980-139950130	HPAF	blood vessel:	n/a	chr9:139950087-139950103
31	POLR2A	chr9:139948160-139950735	A549	lung:	n/a	n/a
32	TCF12	chr9:139949967-139950585	A549	lung:	n/a	chr9:139950226-139950236 chr9:139950426-139950436
33	NR3C1	chr9:139949832-139950704	A549	lung:	n/a	chr9:139950653-139950660
34	POLR2A	chr9:139948466-139950781	HepG2	liver:	n/a	n/a
35	POLR2A	chr9:139948540-139950513	HepG2	liver:	n/a	n/a
36	NR3C1	chr9:139949889-139950678	A549	lung:	n/a	chr9:139950653-139950660
37	ZEB1	chr9:139948152-139950808	HepG2	liver:	n/a	chr9:139949156-139949163 chr9:139948653-139948666 chr9:139948657-139948664
38	ZBTB7A	chr9:139949454-139950778	ECC-1	luminal epithelium:	n/a	chr9:139950369-139950376
39	NR3C1	chr9:139949889-139950627	A549	lung:	n/a	n/a
40	HEY1	chr9:139949249-139950540	HepG2	liver:	n/a	n/a
41	MAX	chr9:139949455-139950515	ECC-1	luminal epithelium:	n/a	chr9:139950356-139950366
42	POLR2A	chr9:139949956-139950559	HepG2	liver:	n/a	n/a
43	USF1	chr9:139949999-139950544	ECC-1	luminal epithelium:	n/a	n/a
44	EP300	chr9:139949993-139950445	SK-N-SH_RA	brain:	n/a	chr9:139950181-139950194
45	EP300	chr9:139949484-139950801	ECC-1	luminal epithelium:	n/a	chr9:139950181-139950194
46	NFIC	chr9:139949947-139950467	HepG2	liver:	n/a	n/a
47	POLR2A	chr9:139947860-139950711	A549	lung:	n/a	n/a
48	EP300	chr9:139949969-139950526	HepG2	liver:	n/a	chr9:139950181-139950194
49	EP300	chr9:139949923-139950509	SK-N-SH_RA	brain:	n/a	chr9:139950181-139950194
50	SRF	chr9:139949805-139950489	ECC-1	luminal epithelium:	n/a	chr9:139950356-139950366

No.	Distal block	Cell Line	Cell type
1	chr9:139837381..139841533-chr9:139948424..139951873,5	MCF-7	breast:
2	chr9:139947764..139950354-chr9:139981762..139983945,2	K562	blood:
3	chr9:139947450..139951444-chr9:140134269..140137084,4	MCF-7	breast:
4	chr9:139946459..139950309-chr9:139970278..139975130,5	MCF-7	breast:
5	chr9:139948473..139951125-chr9:140121496..140123171,3	MCF-7	breast:
6	chr9:139948628..139951307-chr9:140009238..140012044,2	K562	blood:
7	chr9:139945464..139950452-chr9:139979490..139982063,5	MCF-7	breast:
8	chr9:139947182..139950009-chr9:139970267..139973726,4	MCF-7	breast:
9	chr9:139948345..139950575-chr9:140118073..140121229,3	MCF-7	breast:
10	chr9:139948900..139950917-chr9:140119260..140122002,2	K562	blood:
11	chr9:139884830..139892589-chr9:139945996..139953148,8	MCF-7	breast:
12	chr9:139949520..139951456-chr9:139952946..139954837,2	K562	blood:
13	chr9:139947724..139950049-chr9:140194440..140197207,2	K562	blood:
14	chr9:139942638..139950513-chr9:139960535..139967570,20	MCF-7	breast:
15	chr9:139948009..139950246-chr9:140148650..140150700,2	MCF-7	breast:
16	chr9:139937693..139940136-chr9:139948758..139951686,3	K562	blood:

Variant related genes	Relation type
ENSG00000229257	TF binding region
ENTPD2	TF binding region
ENSG00000233198	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000186193	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000197355	Chromatin interaction
ENSG00000176978	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000188986	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10870173	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10870174	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10870175	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1138628	0.84[ASW][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs17853460	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2176675	0.84[ASW][hapmap]
rs2292925	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750517	0.86[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3763662	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763663	0.90[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3814504	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4880085	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4880087	1.00[ASW][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4880089	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs4880091	0.84[ASW][hapmap];1.00[YRI][hapmap]
rs4880195	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4880199	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs6420280	0.84[ASW][hapmap];1.00[YRI][hapmap]
rs6605	0.84[ASW][hapmap];0.81[MEX][hapmap];0.93[AFR][1000 genomes]
rs9314873	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9411243	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9411244	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9411299	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9411300	0.96[ASN][1000 genomes]
rs9411301	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:88 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
10	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
11	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
12	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
13	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
14	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
15	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
16	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
17	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
18	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
19	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
20	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
21	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
22	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
23	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
24	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
25	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
26	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
27	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
28	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
29	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
30	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
31	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
32	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
33	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
34	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
35	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
36	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
37	nsv894515	chr9:139860631-139963091	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
38	nsv894517	chr9:139860631-139977351	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
39	nsv894516	chr9:139860631-139979276	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
40	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
41	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
42	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
43	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
44	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
45	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
46	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
47	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
48	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
49	nsv894534	chr9:139869914-139950351	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
50	nsv1053902	chr9:139876167-139991102	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs9411242	DPP7	cis	lymphoblastoid	seeQTL
rs9411242	SNORD36C	cis	parietal	SCAN
rs9411242	C9orf142	cis	cerebellum	SCAN
rs9411242	DPP7	Cis_1M	lymphoblastoid	RTeQTL
rs9411242	EGFL7	cis	cerebellum	SCAN
rs9411242	ADAMTS13	cis	cerebellum	SCAN
rs9411242	COL5A1	cis	cerebellum	SCAN
rs9411242	LCNL1	cis	parietal	SCAN
rs9411242	LCN8	cis	cerebellum	SCAN
rs9411242	MAN1B1	cis	Whole Blood	GTEx

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139947000-139951000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
2	chr9:139947400-139950800	Bivalent Enhancer	Adipose Nuclei	Adipose
3	chr9:139947600-139950600	Enhancers	Fetal Heart	heart
4	chr9:139948000-139950400	Enhancers	Lung	lung
5	chr9:139948400-139950800	Enhancers	Brain Anterior Caudate	brain
6	chr9:139948400-139950800	Enhancers	Left Ventricle	heart
7	chr9:139948600-139950400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
8	chr9:139948600-139950600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
9	chr9:139948600-139950800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:139948600-139952200	Enhancers	Right Atrium	heart
11	chr9:139948800-139950600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr9:139948800-139950800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr9:139948800-139950800	Enhancers	Ovary	ovary
14	chr9:139948800-139951400	Enhancers	Fetal Lung	lung
15	chr9:139948800-139951600	Enhancers	Brain Angular Gyrus	brain
16	chr9:139949000-139950200	Flanking Active TSS	Rectal Smooth Muscle	rectum
17	chr9:139949000-139950400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr9:139949000-139950600	Enhancers	Esophagus	oesophagus
19	chr9:139949000-139950600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr9:139949000-139950600	Enhancers	HMEC	breast
21	chr9:139949000-139950800	Enhancers	Brain Substantia Nigra	brain
22	chr9:139949000-139950800	Bivalent Enhancer	Placenta	Placenta
23	chr9:139949000-139950800	Enhancers	Gastric	stomach
24	chr9:139949000-139951600	Weak transcription	Small Intestine	intestine
25	chr9:139949000-139951600	Enhancers	Spleen	Spleen
26	chr9:139949000-139952000	Enhancers	Brain Hippocampus Middle	brain
27	chr9:139949000-139963600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:139949200-139950200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:139949200-139950200	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr9:139949200-139950600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:139949200-139950600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:139949200-139950600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:139949200-139950800	Enhancers	Pancreas	Pancrea
34	chr9:139949200-139951600	Bivalent Enhancer	Fetal Stomach	stomach
35	chr9:139949200-139952000	Enhancers	Liver	Liver
36	chr9:139949200-139962400	Weak transcription	K562	blood
37	chr9:139949400-139950600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
38	chr9:139949400-139950800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
39	chr9:139949400-139950800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:139949400-139950800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:139949400-139950800	Enhancers	Fetal Brain Male	brain
42	chr9:139949400-139952200	Enhancers	Stomach Mucosa	stomach
43	chr9:139949400-139952400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:139949600-139950600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:139949600-139950600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:139949600-139950600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:139949600-139950600	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr9:139949600-139950800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:139949600-139950800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr9:139949600-139950800	Enhancers	Right Ventricle	heart

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