Variant report

Variant	rs9416762
Chromosome Location	chr10:28200029-28200030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28198019..28200299-chr10:28200413..28203306,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2257211	1.00[AFR][1000 genomes]
rs7074450	1.00[AFR][1000 genomes]
rs7916427	1.00[AFR][1000 genomes]
rs9299594	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28188400-28214000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28195800-28203800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28199600-28200400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:28199600-28200400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:28199600-28201600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:28199600-28201800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:28199800-28200200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:28199800-28202000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:28200000-28200200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:28200000-28200200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:28200000-28200400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr10:28200000-28200400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:28200000-28200400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:28200000-28200400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:28200000-28200400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:28200000-28200400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:28200000-28200600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:28200000-28201000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr10:28200000-28201200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:28200000-28201800	Enhancers	Fetal Lung	lung

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