Variant report

Variant	rs941757
Chromosome Location	chr4:74718845-74718846
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:74718800-74718950	HCM	heart:	n/a	n/a
2	ZNF263	chr4:74718748-74719892	HEK293-T-REx	kidney:	n/a	chr4:74719468-74719489

Variant related genes	Relation type
PF4V1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2367288	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2367289	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7658970	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872914	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs941758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74706600-74719000	Weak transcription	Pancreas	Pancrea
2	chr4:74716400-74719200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:74718600-74719000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr4:74718600-74719000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:74718600-74719000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:74718600-74719000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:74718600-74719200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
8	chr4:74718800-74719000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:74718800-74719000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr4:74718800-74719000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:74718800-74719000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:74718800-74719000	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:74718800-74719000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:74718800-74719000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:74718800-74719000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:74718800-74719000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:74718800-74719000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:74718800-74719000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:74718800-74719000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:74718800-74719000	Enhancers	HMEC	breast
21	chr4:74718800-74719000	Enhancers	NHDF-Ad	bronchial
22	chr4:74718800-74719000	Active TSS	NHEK	skin
23	chr4:74718800-74719200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
24	chr4:74718800-74719200	Bivalent Enhancer	Fetal Stomach	stomach
25	chr4:74718800-74719400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr4:74718800-74719400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:74718800-74719400	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr4:74718800-74719400	Enhancers	Gastric	stomach
29	chr4:74718800-74719400	Enhancers	NHLF	lung
30	chr4:74718800-74719600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr4:74718800-74719600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr4:74718800-74719600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:74718800-74719600	Enhancers	Liver	Liver
34	chr4:74718800-74719600	Bivalent Enhancer	Fetal Intestine Large	intestine
35	chr4:74718800-74719600	Enhancers	HUVEC	blood vessel
36	chr4:74718800-74719800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr4:74718800-74719800	Enhancers	Fetal Thymus	thymus

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