Variant report

Variant	rs9419564
Chromosome Location	chr10:157956-157957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:157854..158786-chr10:172455..173222,2	MCF-7	breast:
2	chr10:157854..158876-chr10:172455..173384,4	MCF-7	breast:
3	chr10:134908..136884-chr10:155727..158203,2	MCF-7	breast:
4	chr10:135879..136725-chr10:157771..158758,2	MCF-7	breast:
5	chr10:155678..158681-chr10:179805..182883,3	MCF-7	breast:
6	chr10:153907..155670-chr10:157538..160517,2	MCF-7	breast:
7	chr10:156667..158237-chr10:173423..176164,2	K562	blood:
8	chr10:156274..158254-chr10:169856..171725,2	MCF-7	breast:
9	chr10:135892..136725-chr10:157771..158381,2	MCF-7	breast:
10	chr10:157127..159281-chr10:162871..165537,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11251906	0.83[EUR][1000 genomes]
rs11253286	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12218882	0.83[EUR][1000 genomes]
rs2379069	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4390277	0.84[ASN][1000 genomes]
rs4469806	0.84[ASN][1000 genomes]
rs4469807	0.84[ASN][1000 genomes]
rs4504990	0.84[ASN][1000 genomes]
rs4537685	0.84[ASN][1000 genomes]
rs6560723	0.84[ASN][1000 genomes]
rs7081782	0.84[ASN][1000 genomes]
rs72651781	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7910845	0.84[ASN][1000 genomes]
rs7918734	0.84[ASN][1000 genomes]
rs9286070	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329277	0.84[ASN][1000 genomes]
rs9329281	0.84[ASN][1000 genomes]
rs9419433	0.84[ASN][1000 genomes]
rs9419473	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9419475	1.00[EUR][1000 genomes]
rs9419539	0.85[EUR][1000 genomes]
rs9419556	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9419557	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9419560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:151600-161600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:157600-158000	Enhancers	Placenta	Placenta
3	chr10:157600-159000	Enhancers	NHEK	skin
4	chr10:157800-158400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:157800-159000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:157800-159000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:157800-159600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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