Variant report

Variant	rs9421696
Chromosome Location	chr10:90846661-90846662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90835486..90838923-chr10:90846625..90848584,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10509563	0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11202955	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12268223	0.82[ASN][1000 genomes]
rs1937333	0.80[ASN][1000 genomes]
rs1937336	0.81[CEU][hapmap]
rs2000360	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2247755	0.96[CEU][hapmap]
rs2252139	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2253515	0.95[EUR][1000 genomes]
rs2255465	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2494643	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2801533	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2801536	0.83[EUR][1000 genomes]
rs2801539	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2841016	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2841019	0.96[EUR][1000 genomes]
rs2841021	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2841024	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2841025	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2841026	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2841030	0.98[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2841032	0.93[EUR][1000 genomes]
rs34582012	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7076595	0.93[EUR][1000 genomes]
rs7081499	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7084166	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7100350	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7914848	0.80[CEU][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7919067	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9633743	0.82[ASN][1000 genomes]
rs9651494	0.96[CEU][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv467418	chr10:90826252-90874468	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551843	chr10:90826252-90874468	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2829934	chr10:90826779-90874468	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90841800-90861000	Weak transcription	Aorta	Aorta
2	chr10:90842000-90851600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:90843800-90847400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:90844200-90850400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:90844400-90847400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:90844600-90847200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:90845200-90850600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:90845200-90855000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:90845400-90847000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:90845400-90850000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:90845400-90850600	Weak transcription	Brain Substantia Nigra	brain
12	chr10:90845600-90847000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:90845800-90847200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:90845800-90847400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:90845800-90847400	Flanking Active TSS	Dnd41	blood
16	chr10:90846000-90846800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:90846000-90847000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:90846000-90847200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:90846000-90847400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr10:90846000-90847400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:90846200-90846800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr10:90846200-90846800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:90846200-90846800	Enhancers	Brain Germinal Matrix	brain
24	chr10:90846200-90847000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:90846200-90847200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr10:90846200-90847200	Flanking Active TSS	NHDF-Ad	bronchial
27	chr10:90846200-90847400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:90846200-90847400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:90846200-90847400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:90846200-90847400	Flanking Active TSS	HSMMtube	muscle
31	chr10:90846400-90846800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:90846400-90847000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:90846400-90847200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:90846400-90847200	Enhancers	Fetal Muscle Leg	muscle
35	chr10:90846400-90847200	Flanking Active TSS	NHLF	lung
36	chr10:90846400-90847400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:90846400-90847400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr10:90846400-90847400	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr10:90846400-90847400	Flanking Active TSS	Osteobl	bone
40	chr10:90846600-90846800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:90846600-90846800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:90846600-90846800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:90846600-90846800	Enhancers	Brain Anterior Caudate	brain
44	chr10:90846600-90846800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:90846600-90846800	Enhancers	Fetal Muscle Trunk	muscle
46	chr10:90846600-90846800	Flanking Active TSS	Left Ventricle	heart
47	chr10:90846600-90846800	Flanking Active TSS	Right Atrium	heart
48	chr10:90846600-90847000	Enhancers	H1 Cell Line	embryonic stem cell
49	chr10:90846600-90847000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:90846600-90847000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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