Variant report

Variant	rs9421698
Chromosome Location	chr10:90850414-90850415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1937325	0.81[ASN][1000 genomes]
rs1937337	0.81[ASN][1000 genomes]
rs1937345	0.81[ASN][1000 genomes]
rs2154254	0.81[ASN][1000 genomes]
rs2245863	0.81[ASN][1000 genomes]
rs2255470	0.81[ASN][1000 genomes]
rs2489881	0.81[ASN][1000 genomes]
rs2801534	0.81[ASN][1000 genomes]
rs2801535	0.81[ASN][1000 genomes]
rs2801537	0.81[ASN][1000 genomes]
rs2841014	0.81[ASN][1000 genomes]
rs2841015	0.81[ASN][1000 genomes]
rs2841022	0.81[ASN][1000 genomes]
rs2841028	0.81[ASN][1000 genomes]
rs2863225	0.81[ASN][1000 genomes]
rs7082593	0.81[ASN][1000 genomes]
rs7094490	0.81[ASN][1000 genomes]
rs7099481	0.81[ASN][1000 genomes]
rs9325605	0.81[ASN][1000 genomes]
rs9421699	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv467418	chr10:90826252-90874468	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551843	chr10:90826252-90874468	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2829934	chr10:90826779-90874468	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90841800-90861000	Weak transcription	Aorta	Aorta
2	chr10:90842000-90851600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:90845200-90850600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:90845200-90855000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:90845400-90850600	Weak transcription	Brain Substantia Nigra	brain
6	chr10:90846800-90850600	Weak transcription	Brain Anterior Caudate	brain
7	chr10:90846800-90852800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:90847000-90852400	Weak transcription	Placenta	Placenta
9	chr10:90847000-90852400	Weak transcription	K562	blood
10	chr10:90847200-90850600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:90847400-90850600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:90847400-90850600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:90847400-90850600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:90847400-90850600	Weak transcription	Adipose Nuclei	Adipose
15	chr10:90847400-90850600	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:90847400-90850600	Weak transcription	Fetal Lung	lung
17	chr10:90847400-90850600	Weak transcription	HSMM	muscle
18	chr10:90847400-90850600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:90847400-90850600	Weak transcription	Osteobl	bone
20	chr10:90847400-90850800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:90847400-90851600	Weak transcription	Right Atrium	heart
22	chr10:90847400-90851800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:90847400-90852000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:90847400-90853000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:90847400-90859200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:90847800-90850600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:90847800-90850600	Weak transcription	HSMMtube	muscle
28	chr10:90847800-90851600	Weak transcription	Psoas Muscle	Psoas
29	chr10:90847800-90851800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:90848000-90851600	Weak transcription	Left Ventricle	heart
31	chr10:90848000-90851800	Enhancers	NHLF	lung
32	chr10:90848800-90850600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:90849400-90850600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:90849400-90850600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:90849800-90850800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr10:90850000-90850800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:90850200-90850600	Weak transcription	NHDF-Ad	bronchial
38	chr10:90850400-90851000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:90850400-90852000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links