Variant report

Variant	rs9422351
Chromosome Location	chr10:48603866-48603867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10736371	0.87[EUR][1000 genomes]
rs10749628	0.87[EUR][1000 genomes]
rs10788713	0.88[EUR][1000 genomes]
rs1869168	0.85[AFR][1000 genomes]
rs1890776	0.88[EUR][1000 genomes]
rs2066141	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2100343	0.88[EUR][1000 genomes]
rs2123197	0.99[ASN][1000 genomes]
rs2382746	0.87[EUR][1000 genomes]
rs2382747	0.81[EUR][1000 genomes]
rs7074717	0.90[EUR][1000 genomes]
rs7092829	0.88[EUR][1000 genomes]
rs716709	0.88[EUR][1000 genomes]
rs718332	0.88[EUR][1000 genomes]
rs930739	0.87[EUR][1000 genomes]
rs9422327	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9422351	ZNF22	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48595000-48604800	Weak transcription	Thymus	Thymus
2	chr10:48602000-48604000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:48602400-48604200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:48603400-48606200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:48603600-48606200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:48603600-48615200	Weak transcription	Spleen	Spleen
7	chr10:48603800-48604400	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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