Variant report

Variant	rs9423546
Chromosome Location	chr10:4823794-4823795
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 5 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs9423546	AKR1C3	cis	cerebellum	SCAN
rs9423546	NCRNA00200	cis	cerebellum	SCAN
rs9423546	PFKFB3	cis	cerebellum	SCAN
rs9423546	SLC28A3	trans	parietal	SCAN
rs9423546	AKR1E2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4822400-4824400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:4822600-4823800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:4822600-4824000	Enhancers	HMEC	breast
4	chr10:4823000-4829800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:4823200-4824000	Enhancers	NHDF-Ad	bronchial
6	chr10:4823200-4824200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:4823200-4824600	Enhancers	HUVEC	blood vessel
8	chr10:4823400-4823800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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