Variant report

Variant	rs942497
Chromosome Location	chr6:33783445-33783446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1535948	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1535949	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886354	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2281816	0.81[JPT][hapmap]
rs3763260	0.81[JPT][hapmap]
rs4713686	0.81[JPT][hapmap]
rs4713689	0.85[ASN][1000 genomes]
rs4713690	0.81[ASN][1000 genomes]
rs62397561	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs749795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767896	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33776400-33792400	Weak transcription	Right Atrium	heart
2	chr6:33778600-33784000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33780400-33783800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:33780600-33783800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:33780600-33783800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:33781600-33784000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:33781800-33784800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:33781800-33792400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:33782000-33783800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:33782200-33783600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:33782200-33790600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:33782800-33784800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:33782800-33790600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:33783400-33783800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:33783400-33783800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:33783400-33783800	Enhancers	Brain Germinal Matrix	brain
17	chr6:33783400-33783800	Enhancers	Fetal Brain Male	brain
18	chr6:33783400-33783800	Bivalent Enhancer	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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