Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12069167	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586389	0.80[ASN][1000 genomes]
rs2586392	0.83[ASN][1000 genomes]
rs2586394	0.86[ASN][1000 genomes]
rs2586401	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586403	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586404	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586407	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586408	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586410	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586411	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2586412	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2586413	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2757493	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2757495	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2757496	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6684830	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6701929	0.80[ASN][1000 genomes]
rs7550558	0.80[ASN][1000 genomes]
rs9425543	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:172271600-172277400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:172272600-172291600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:172275200-172309800	Weak transcription	Left Ventricle	heart

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