Variant report

Variant	rs9427170
Chromosome Location	chr1:155013042-155013043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155007231..155010221-chr1:155012897..155015285,4	K562	blood:
2	chr1:155012616..155017280-chr1:155162185..155165166,4	MCF-7	breast:
3	chr1:155012791..155014602-chr1:155022048..155023750,2	K562	blood:
4	chr1:155011198..155013215-chr1:155047880..155049655,2	MCF-7	breast:
5	chr1:154946474..154948911-chr1:155011791..155013458,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271748	Chromatin interaction
ENSG00000185499	Chromatin interaction
ENSG00000160691	Chromatin interaction
ENSG00000173207	Chromatin interaction
ENSG00000143537	Chromatin interaction
ENSG00000264349	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12087657	0.92[LWK][hapmap];0.82[YRI][hapmap]
rs4578216	0.86[LWK][hapmap];0.82[YRI][hapmap]
rs9427168	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154990800-155016400	Weak transcription	Spleen	Spleen
2	chr1:155007400-155015800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:155008800-155013200	Enhancers	Placenta	Placenta
4	chr1:155009600-155017000	Weak transcription	Adipose Nuclei	Adipose
5	chr1:155011800-155015200	Weak transcription	Fetal Intestine Large	intestine
6	chr1:155011800-155015200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:155011800-155017000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:155011800-155017000	Weak transcription	Pancreas	Pancrea
9	chr1:155011800-155017000	Weak transcription	Right Atrium	heart
10	chr1:155011800-155017000	Weak transcription	HUVEC	blood vessel
11	chr1:155011800-155017200	Weak transcription	Fetal Heart	heart
12	chr1:155011800-155017200	Weak transcription	Fetal Lung	lung
13	chr1:155012000-155015200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:155012000-155015400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:155012000-155015400	Weak transcription	Gastric	stomach
16	chr1:155012000-155016400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:155012000-155016400	Weak transcription	Lung	lung
18	chr1:155012000-155016400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:155012000-155017000	Weak transcription	Hela-S3	cervix
20	chr1:155012000-155017000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr1:155012000-155017200	Weak transcription	HSMMtube	muscle
22	chr1:155012200-155015000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:155012200-155015000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:155012200-155015000	Weak transcription	Stomach Mucosa	stomach
25	chr1:155012200-155015600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:155012200-155015600	Weak transcription	Liver	Liver
27	chr1:155012200-155015600	Weak transcription	Colonic Mucosa	Colon
28	chr1:155012200-155015800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:155012200-155016000	Weak transcription	A549	lung
30	chr1:155012200-155016400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:155012200-155017000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:155012200-155017000	Weak transcription	Esophagus	oesophagus
33	chr1:155012200-155017200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:155012200-155017200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr1:155012200-155017200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr1:155012200-155017200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:155012200-155017200	Weak transcription	HMEC	breast
38	chr1:155012800-155013400	Bivalent Enhancer	HepG2	liver

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