Variant report

Variant	rs9429429
Chromosome Location	chr1:112492632-112492633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:112471785..112473966-chr1:112490901..112493267,2	MCF-7	breast:
2	chr1:112490532..112494635-chr1:112501551..112504556,3	MCF-7	breast:
3	chr1:112469969..112473442-chr1:112488615..112492900,4	MCF-7	breast:
4	chr1:112486470..112488666-chr1:112490164..112492957,2	K562	blood:
5	chr1:112485823..112488666-chr1:112488945..112492957,3	K562	blood:
6	chr1:112489721..112492720-chr20:46128868..46131473,2	MCF-7	breast:
7	chr1:112478313..112480989-chr1:112491678..112494944,3	MCF-7	breast:
8	chr1:112490790..112493005-chr1:112528676..112530385,2	MCF-7	breast:
9	chr1:112490877..112493146-chr1:112499606..112501981,2	MCF-7	breast:
10	chr1:112490672..112493338-chr17:57084354..57086637,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124151	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3008537	0.89[AMR][1000 genomes]
rs7514512	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831048	chr1:112459697-112680279	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112463400-112506600	Weak transcription	Aorta	Aorta
2	chr1:112473000-112510400	Weak transcription	Liver	Liver
3	chr1:112491600-112493200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr1:112491800-112494600	Weak transcription	Esophagus	oesophagus
5	chr1:112491800-112497000	Weak transcription	Fetal Heart	heart
6	chr1:112491800-112498400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:112491800-112500800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:112492000-112492800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:112492000-112493000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:112492000-112493200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:112492000-112493200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:112492000-112493400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:112492000-112494600	Weak transcription	Left Ventricle	heart
14	chr1:112492000-112498000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:112492200-112494000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:112492200-112494000	Weak transcription	NHEK	skin
17	chr1:112492200-112494200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:112492200-112494200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:112492200-112494200	Weak transcription	Psoas Muscle	Psoas
20	chr1:112492200-112494400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:112492200-112494400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:112492200-112494400	Weak transcription	Right Atrium	heart
23	chr1:112492200-112494600	Weak transcription	Adipose Nuclei	Adipose
24	chr1:112492200-112494600	Weak transcription	Right Ventricle	heart
25	chr1:112492200-112498400	Weak transcription	Brain Anterior Caudate	brain
26	chr1:112492200-112498400	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:112492200-112499400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr1:112492200-112501000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:112492400-112492800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:112492400-112503600	Weak transcription	Brain Angular Gyrus	brain
31	chr1:112492600-112494200	Weak transcription	HMEC	breast

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