Variant report
| Variant | rs9429619 |
|---|---|
| Chromosome Location | chr1:112565067-112565068 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000267280 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs166556 | 1.00[AMR][1000 genomes] |
| rs189724 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs192395 | 1.00[AMR][1000 genomes] |
| rs269082 | 1.00[AMR][1000 genomes] |
| rs269083 | 1.00[AMR][1000 genomes] |
| rs269089 | 1.00[AMR][1000 genomes] |
| rs269111 | 0.87[AFR][1000 genomes] |
| rs55712770 | 1.00[AMR][1000 genomes] |
| rs59715714 | 1.00[AMR][1000 genomes] |
| rs60401722 | 1.00[AMR][1000 genomes] |
| rs74109732 | 1.00[AMR][1000 genomes] |
| rs74109733 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831048 | chr1:112459697-112680279 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
