Variant report

Variant	rs9429850
Chromosome Location	chr1:210929043-210929044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210545831..210547443-chr1:210928453..210930887,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9429851	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9430048	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210917400-210930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210921600-210931400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210927800-210930000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:210928000-210930200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:210928200-210929200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:210928200-210929200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:210928200-210929200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:210928200-210929200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:210928200-210929600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:210928200-210929600	Enhancers	Brain Anterior Caudate	brain
12	chr1:210928200-210930000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:210928200-210930000	Enhancers	Brain Hippocampus Middle	brain
14	chr1:210928200-210930600	Enhancers	Brain Cingulate Gyrus	brain
15	chr1:210928200-210930600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:210928200-210930600	Enhancers	Fetal Brain Male	brain
17	chr1:210928400-210929200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:210928400-210929200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:210928400-210929200	Enhancers	Fetal Muscle Leg	muscle
20	chr1:210928400-210929600	Enhancers	Brain Germinal Matrix	brain
21	chr1:210928400-210929600	Enhancers	Brain Substantia Nigra	brain
22	chr1:210928400-210929600	Enhancers	Fetal Brain Female	brain
23	chr1:210928400-210929600	Enhancers	Fetal Thymus	thymus
24	chr1:210928600-210929200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr1:210928600-210929600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:210928600-210930800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:210928600-210931600	Weak transcription	Esophagus	oesophagus
28	chr1:210928800-210929200	Weak transcription	HSMMtube	muscle
29	chr1:210929000-210930600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:210929000-210930800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:210929000-210931000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:210929000-210931200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:210929000-210931200	Weak transcription	Brain Angular Gyrus	brain

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