Variant report

Variant	rs943288
Chromosome Location	chr13:95862409-95862410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs12428470	0.93[ASN][1000 genomes]
rs12430658	0.84[CEU][hapmap]
rs12854605	0.95[ASN][1000 genomes]
rs1617844	1.00[CEU][hapmap]
rs1678400	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1751008	0.81[CEU][hapmap]
rs1751014	1.00[CEU][hapmap]
rs1751029	0.89[CEU][hapmap]
rs1824911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1824912	0.93[ASN][1000 genomes]
rs1824913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926656	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1926657	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2148529	1.00[CEU][hapmap]
rs2389203	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2766474	0.81[CEU][hapmap]
rs2766476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2892707	0.92[ASN][1000 genomes]
rs3782963	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782966	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782968	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148464	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4148465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4148467	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4148469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148470	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148471	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4238313	0.91[ASN][1000 genomes]
rs4303338	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4334136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371040	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4505186	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs4520712	0.93[ASN][1000 genomes]
rs4612933	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4636781	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs4771907	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4771908	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773848	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773849	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773853	0.95[ASN][1000 genomes]
rs4773854	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs4773855	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs4773857	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6492769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492771	0.95[ASN][1000 genomes]
rs7139533	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321623	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7321744	0.98[ASN][1000 genomes]
rs7322825	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7324706	0.91[ASN][1000 genomes]
rs7325019	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7329432	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7330776	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7332663	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7333281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334994	0.90[ASN][1000 genomes]
rs7335147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335233	0.86[ASN][1000 genomes]
rs7983336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999175	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs899495	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs899496	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516537	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516538	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516539	0.94[ASN][1000 genomes]
rs9516545	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9524828	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9524830	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524835	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9524836	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9524840	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524845	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs9524848	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs9524850	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
2	chr13:95827400-95872400	Weak transcription	NH-A	brain
3	chr13:95834000-95865400	Weak transcription	Psoas Muscle	Psoas
4	chr13:95838200-95867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr13:95839400-95863800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:95840400-95874400	Weak transcription	Pancreas	Pancrea
7	chr13:95842000-95864800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr13:95842000-95869000	Weak transcription	Fetal Kidney	kidney
9	chr13:95842200-95898200	Weak transcription	NHDF-Ad	bronchial
10	chr13:95844400-95864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:95844400-95865600	Weak transcription	Spleen	Spleen
12	chr13:95844400-95867600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr13:95844600-95863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:95846000-95871400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:95846200-95872400	Weak transcription	Brain Anterior Caudate	brain
16	chr13:95847800-95868200	Weak transcription	Fetal Lung	lung
17	chr13:95847800-95880400	Weak transcription	Ovary	ovary
18	chr13:95850800-95867600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:95853800-95863400	Weak transcription	Adipose Nuclei	Adipose
20	chr13:95855000-95863000	Strong transcription	Fetal Intestine Small	intestine
21	chr13:95855400-95863400	Weak transcription	Osteobl	bone
22	chr13:95855400-95867400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr13:95856000-95863000	Strong transcription	A549	lung
24	chr13:95856000-95864400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:95856400-95865400	Weak transcription	Left Ventricle	heart
26	chr13:95856400-95872600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:95856400-95898200	Weak transcription	NHEK	skin
28	chr13:95857400-95865400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr13:95857800-95863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:95858200-95865600	Weak transcription	Small Intestine	intestine
31	chr13:95858600-95865600	Weak transcription	Brain Hippocampus Middle	brain
32	chr13:95858600-95880400	Weak transcription	Fetal Thymus	thymus
33	chr13:95858800-95866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr13:95859000-95863400	Weak transcription	HepG2	liver
35	chr13:95859000-95865400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:95859000-95865400	Weak transcription	HUVEC	blood vessel
37	chr13:95859000-95866400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr13:95859000-95874800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr13:95859000-95878800	Weak transcription	Esophagus	oesophagus
40	chr13:95859000-95879000	Weak transcription	Gastric	stomach
41	chr13:95859000-95885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr13:95859000-95887800	Weak transcription	HSMM	muscle
43	chr13:95859000-95901000	Weak transcription	Aorta	Aorta
44	chr13:95859200-95863200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr13:95859200-95863800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr13:95859200-95880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr13:95859200-95901400	Weak transcription	Primary T cells from cord blood	blood
48	chr13:95859200-95902200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr13:95859800-95863000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr13:95860200-95862800	Strong transcription	Rectal Mucosa Donor 29	rectum

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