Variant report

Variant	rs9436010
Chromosome Location	chr1:150498678-150498679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10888584	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11204662	0.81[EUR][1000 genomes]
rs12031973	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1815545	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34739718	0.98[ASN][1000 genomes]
rs3754214	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3754217	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4970979	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4971010	0.81[EUR][1000 genomes]
rs7366347	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7513247	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7553647	0.81[AMR][1000 genomes]
rs875514	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9436120	0.81[AMR][1000 genomes]
rs9661040	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
2	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
3	esv1814231	chr1:150479528-150540117	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9436010	ADAMTSL4	cis	Esophagus Mucosa	GTEx
rs9436010	MRPS21	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150489000-150505400	Weak transcription	Right Ventricle	heart
2	chr1:150489200-150501800	Weak transcription	Right Atrium	heart
3	chr1:150489400-150500200	Weak transcription	Osteobl	bone
4	chr1:150489400-150500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:150489600-150501600	Weak transcription	Brain Anterior Caudate	brain
6	chr1:150490600-150500400	Weak transcription	Stomach Mucosa	stomach
7	chr1:150494400-150500400	Weak transcription	HSMMtube	muscle
8	chr1:150495200-150501600	Weak transcription	Psoas Muscle	Psoas
9	chr1:150496800-150500400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:150498400-150501400	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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